RNA id: TU113927


Basic Information

Item Value
RNA id TU113927
length 3711
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G91321
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 10357400 ~ 10361148 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgTATACATGCTTTAAACATGCAACAACATGTTGGATTTCATACTAAACCAGGGGAAGATGCAAGTTTATGAGCCATGAAAAATCAACGTTTGCCAATCTTTGCTTGAATTTGCGTAAATATGTATAAACCTGGTTGTACATATCTTCTTCGCTGAAAGAAATTCCTTCAGAATCAAGACCCTAAGGACACTgatttttctctcctcttcaaacaaatgaaagaaacctGATGTCTCATACATATaagacaacacaaacaaaagatatATTATAATGCAAGATTGCAGGCTGCATGAAGATAAACATAGAAGATGGATGAACACAACTATATTGTGAACACTCTGCGAGCACATTCACAAGATCCATACAGGAAATAAATGGGTGCGTAATCTTtaggatgttttcttttttttttttttcatacatgaGATGGGTTTCAGCTTGCAGACTTTTCATCCTTAAAGCATGTAGAAGTACATAAGCAGGAGGATGACACAACAAGCAGTGTAGTTGGCTTTGGCCCTGCATTGAAGTATTATCTAGGCTACagtgagattatatatatatatatatatatacacacacacacatagatacatacatacatgaatacacaTATGCGCACACATTTACTGCCACAGCTTTCAGCTGTTGCATTTGTGACAGCATACAGGTCTAAGAATCAAGAATGTAATACATCTCAATGGAGTACAATAATCAAAATCTCTATTGTGACTTTCAAAGCAAGAACAAGGGACAAAGaatcatgttttgtatttaaaatagtgGGAAATCTAACAAGTGGATATCATAGACAAACCAAAGTTTTGGAAATAACAAGCAGGCATGAAGGTATAAAATGATGTTTCTCTGGTAAGTTTTAGAAAAAATAGCTTTTTGGTAGTTTGTTGctttatatacatgcatatgtgtaaatgtatagtCAAAGTATAGGTTGATTGATCAGTAAGATCCAGATGTATTGCACCTTCTGTTCCATTTTGAATGACCACTACAAGTCCCAAGATTTTGTGCCCCTTTTATCTGCTGCATTTACTAAATTGTGtcacattataaatgtaattctgGTTAAAATTTATTAAGGTAAAAGGGCACAAGCTCtggacaaacaataaaaaaaaaactctgaagcaattgaatattttgtatgttatcagatgacaacaaaaaaaatctaatcctTTGTTAAATGACTGCTTTTGGCAGTACATCATTCTGTAGTCTGTAAGTACTTGTTGTTAAGAGAAGTGCTTCTAAAAAGCTTATAAActgtatacataaatatgtatttttattgcacGTTTAAAGGGAATTTACTTCACTTACTgcgaaggaaaaaaaataaaaaaataaaaaaaatattttctttatatgtgAACATGGAAGTCCATCCTGTTGCTTGCTTTTGTTATATCTAAACAAACATTAGCCATGTAGTCTTATTTAGGATTCCAGTTTAAAGAGGATGAAAATATACTTGGATACATCAATTGACTACcgtgaacattttttttatttatttagttttgttttgtttagggcAGAATAActtctatatattttcttcatccAGAAATGGCCATTACAGTGACGATAATTATGTGCCGAAAGGTATGTTACCTGTAAATGTCTGGCTTTCTTAATACATTGAAACAAGTTGCAACTTTATACTGGCATGGCATagaattatgtttattttttattattttcctttattgtaGAATTATTCTGGTGCCAGTTTGTATATTTTGAGTGCTTCTGTACAAATAGAGTGaatgcaaaatatgcaattGTGCCTTTTTATACCTATTGGTATGATTCAGTGTTGGGTGGTAATGGAAGAACAAAGTGTGCTGGGATGCTGGGCTTTTCAATATGTTTGGATGGTACTTAcctaaaaatgttatataatattgattatttattatattgccAGATTCTGCCAAGTCAGTACCCAGGAGGTGAGGAGTTGGCATTAGGCTAAAAATAGGGTGTTGACTCAGACAGATGCTACATTTCAAGCACTTCTTGAGTATtttgaacattaaataaataggtTCTGTTTACAATGGACATGCTTACAATTCAGAGGCAGAGCAGACAGACAGCCATTACAATAAGTAATCAACAATTAACGTGAATTAGCAAATGCTAAAATACATGGAAACAGTCATTAAACTgtccaaaaatatattgtagtgatCCTGTAGTGATCCCCTTGCTAAAGGGCCTGGGCCTTTTATGGATGGGGTAAAGTTGCTGCACTTGTGGCACGGGAGACTGGGGCTCAAATCTCGCCGTGGCCGGAACCCCCCAGGGTGTTACAATACATAGCGAGGTTGAAATGAGCTGCCTTAGCAAATGTTCATACTAAATGCATGTATTCATAGTAAATAACAAAGTGCAGTGTATGGTGCAGAAATATGATGTGGACACATTTGACACACTGAATAGGAAACGAATGATGTCAAACTGGGGGCGGGGCTATTGCTTGGCAGAATCTGATCTATCTTCTGGCTACTCAGATAAAAAGACCAGTCAAACTCCTTTTGCATTATGGAAAAATCTAACATTATAATATGGTAAGACTTTTACCATCTTTTAAGACACGACATTTCACTTCAAACATGTCCAGAGctgttatgcaaatgtattttatgttaataatgtttgttttattttatttttcccagaaAGTAGCACCTGATCATTATATTACAtacatgtttcattatttttgtcgGTGAAACAGagattttttaacttttatgcATGCAACCCTTACAGACTtacacatttctataaaaacacTTGAAGACTTTTGACTGTTCAGACATGAGTAGACCAGAAATCAATTTGAAAGATTAACTAGGGATTGATGAAAACCTGAAATGGGGGTGCTGGCTGAATGATGACCTCAGGAAGCAAAGCAATTCTAATCAGACAGTAATTCTCAAAATCCTTGTTTAAATTCTGTGTGGTCTATAGGATGTAAGTGATTCAAGTCCCATTTTTCCCATCTCTGAAATTCTCATAGGTTCAATCATCTTGGTAGTCAAATTCAGTCCCCTGTAAAGTGGTATTCATCTCAAGAAATTCCAGTCCAGCAAAGAGTTATATGAAAGTAACAAATGATCTTAACCAGTAATTCATTGGGCAATCCATAATGTAAAGGTAGTTTTGGAAGAGATGTAGTTTAGtaagtttttatttcaaatgatcaAGAGCAATACATGAACACTACCAATCATAAAGTTTTACGTTGAGGTCTTCAAGGGTGAAACGTTTAGTAGGTAAGGCAGGAGGATATCGCATGGTATACATTTGGGAAACAAATTCCAGATGTCCTTAATATGGTACTTAAAACTTCCagcaaaatctaaaatgtataattttgtttgtttgactaGTTATCTTTAAAGTCACTGGGATCAGAATTAAAGTAGAATAATATTCTCACAGGAAAATAGTTTCCTCCTACCTGGGGTATATTTTCAGCCGGTTGTTCCTAAGATTTAAAGCACTCGCATTCAGTGTGATGAGATCTGTTTGTAATATTAATCATGAACTATTCTTCTGCGACTTGGATGTTGATATTGAAACAAGGAACAATTTATCATTGTTTATTATGAGTCACTATGCACGCAGCTATGCTGAACATGGCAAAATGTATTGAACGCAAGTCCAC

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113917 lncRNA downstream 59592 10297405 ~ 10297808 (-) True G91311
TU113907 lncRNA downstream 677179 9677471 ~ 9680221 (-) True G91301
TU113906 lncRNA downstream 681621 9675546 ~ 9675779 (-) True G91300
TU113904 lncRNA downstream 694612 9662564 ~ 9662788 (-) True G91298
TU113903 lncRNA downstream 724541 9632645 ~ 9632859 (-) True G91297
TU113962 lncRNA upstream 706565 11067713 ~ 11068015 (-) True G91354
TU113963 lncRNA upstream 790230 11151378 ~ 11151698 (-) True G91355
TU113967 lncRNA upstream 906958 11268106 ~ 11268595 (-) True G91359
TU113970 lncRNA upstream 926707 11287855 ~ 11288163 (-) True G91362
TU113985 lncRNA upstream 929180 11290328 ~ 11291234 (-) True G91371
AMCG00017554 mRNA downstream 810086 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017550 mRNA downstream 985321 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017548 mRNA downstream 1071897 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017549 mRNA downstream 1125647 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017547 mRNA downstream 1172654 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017556 mRNA upstream 823 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017555 mRNA upstream 126149 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017559 mRNA upstream 586598 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017558 mRNA upstream 586962 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017557 mRNA upstream 932460 11293608 ~ 11315800 (-) True AMCG00017557
TU113686 other downstream 1601493 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 1842445 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 2360805 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 2524808 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 3244219 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 152 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 4072010 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 5505799 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 5669254 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 5669308 16030456 ~ 16030905 (-) False G92129

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2009617 True 3828 lncRNA 0.37 2 NC_048585.1 56451159 ~ 56455022 (+)