RNA id: TU113942



Basic Information


Item Value
RNA id TU113942
length 285
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G91334
representative False

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 10740103 ~ 10764336 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttgaccccttcgacttagtacttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggaaggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccacacCAGGAATAAACCATCcatgacccattttcaatgccctggctgagggaaggaggttctaaC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113936 lncRNA upstream 171675 10568178 ~ 10568428 (+) True G91329
TU113916 lncRNA upstream 442295 10297402 ~ 10297808 (+) True G91310
TU113913 lncRNA upstream 573356 10166530 ~ 10166747 (+) True G91307
TU113726 lncRNA upstream 1899065 8838647 ~ 8841038 (+) True G91151
TU113705 lncRNA upstream 1915266 8819713 ~ 8824837 (+) True G91135
TU113947 lncRNA downstream 25262 10789598 ~ 10789889 (+) True G91339
TU113949 lncRNA downstream 25966 10790302 ~ 10790668 (+) True G91341
TU113961 lncRNA downstream 303377 11067713 ~ 11068015 (+) True G91353
TU113969 lncRNA downstream 523525 11287861 ~ 11288163 (+) True G91361
TU113973 lncRNA downstream 525952 11290288 ~ 11291576 (+) True G91363
AMCG00017552 mRNA upstream 844670 9893228 ~ 9895433 (+) True AMCG00017552
AMCG00017553 mRNA upstream 1071127 9630401 ~ 9668976 (+) True AMCG00017553
AMCG00017551 mRNA upstream 1367908 9257206 ~ 9372195 (+) True AMCG00017551
AMCG00017545 mRNA upstream 1592764 9127763 ~ 9147339 (+) True AMCG00017545
AMCG00017544 mRNA upstream 1636900 9086577 ~ 9103203 (+) True AMCG00017544
AMCG00017560 mRNA downstream 625853 11390189 ~ 11402671 (+) True AMCG00017560
AMCG00017561 mRNA downstream 743540 11507876 ~ 11525014 (+) True AMCG00017561
AMCG00017562 mRNA downstream 1102829 11867165 ~ 11879473 (+) True AMCG00017562
AMCG00017577 mRNA downstream 1259920 12024256 ~ 12024505 (+) True AMCG00017577
AMCG00017578 mRNA downstream 1260197 12024533 ~ 12029958 (+) True AMCG00017578
TU113887 other upstream 1156823 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 1986322 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 2050697 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 2607249 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 3046756 7692585 ~ 7693347 (+) True G90881
TU114078 other downstream 1115278 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 3272540 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 4312989 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 4348274 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 5102695 15867031 ~ 15867634 (+) True G92123

Expression Profile