RNA id: TU113962


Basic Information

Item Value
RNA id TU113962
length 303
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G91354
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11067713 ~ 11068015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaataacatttctaattgatttctcaaatgtcatgaatgataaactccaaactgttaaacttatctgaacttcgtcgcagagaggcctctctgtcttcgggctcagataacagcacacggcacgaggtccgtgtggtttggaacaaaggcagtccggttcggctttgtccaagaacttccactcagtcgatgcacctggaagttggggtttcgcgaaagtcttttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatcttctttgcaagcagggtttttccACCgt

Function

GO:

id name namespace
GO:0050803 regulation of synapse structure or activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113927 lncRNA downstream 706565 10357400 ~ 10361148 (-) True G91321
TU113917 lncRNA downstream 769905 10297405 ~ 10297808 (-) True G91311
TU113907 lncRNA downstream 1387492 9677471 ~ 9680221 (-) True G91301
TU113906 lncRNA downstream 1391934 9675546 ~ 9675779 (-) True G91300
TU113904 lncRNA downstream 1404925 9662564 ~ 9662788 (-) True G91298
TU113963 lncRNA upstream 83363 11151378 ~ 11151698 (-) True G91355
TU113967 lncRNA upstream 200091 11268106 ~ 11268595 (-) True G91359
TU113970 lncRNA upstream 219840 11287855 ~ 11288163 (-) True G91362
TU113985 lncRNA upstream 222313 11290328 ~ 11291234 (-) True G91371
TU113996 lncRNA upstream 329505 11397520 ~ 11397731 (-) True G91381
AMCG00017558 mRNA downstream 118004 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017559 mRNA downstream 119708 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017555 mRNA downstream 571563 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017556 mRNA downstream 705446 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017554 mRNA downstream 1520399 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017557 mRNA upstream 225593 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017572 mRNA upstream 288790 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017566 mRNA upstream 346313 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017563 mRNA upstream 436009 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017571 mRNA upstream 463095 11531110 ~ 11536385 (-) True AMCG00017571
TU113928 other downstream 570609 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2311806 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 2552758 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3071118 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3235121 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 3365143 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4798932 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4962387 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4962441 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 6400590 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile