RNA id: TU113967


Basic Information

Item Value
RNA id TU113967
length 490
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G91359
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 11268106 ~ 11268595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtgtacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcccactgagagactgagggaactgaaccttttcaccctggaacagaggagactacatggggacttgatccaagtcttcaaaatcatgaagggcatcgaccacatcaaacccgaggagcttttccagatcagcagggacacacagacccggggacacaaatagaaattgtgcttcaaggcattcaagatggaaaacaggagacacttcttcacacagagagttattacaatctggaacaaactccccagcgatgtggttgaagctgaaaatttggaaacattcaaaaatagactggatagtatcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113963 lncRNA downstream 116408 11151378 ~ 11151698 (-) True G91355
TU113962 lncRNA downstream 200091 11067713 ~ 11068015 (-) True G91354
TU113927 lncRNA downstream 906958 10357400 ~ 10361148 (-) True G91321
TU113917 lncRNA downstream 970298 10297405 ~ 10297808 (-) True G91311
TU113907 lncRNA downstream 1587885 9677471 ~ 9680221 (-) True G91301
TU113970 lncRNA upstream 19260 11287855 ~ 11288163 (-) True G91362
TU113985 lncRNA upstream 21733 11290328 ~ 11291234 (-) True G91371
TU113996 lncRNA upstream 128925 11397520 ~ 11397731 (-) True G91381
TU114018 lncRNA upstream 235699 11504294 ~ 11506805 (-) False AMCG00017563
TU114095 lncRNA upstream 559413 11828008 ~ 11829693 (-) True G91466
AMCG00017558 mRNA downstream 318397 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017559 mRNA downstream 320101 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017555 mRNA downstream 771956 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017556 mRNA downstream 905839 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017554 mRNA downstream 1720792 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017557 mRNA upstream 25013 11293608 ~ 11315800 (-) True AMCG00017557
AMCG00017572 mRNA upstream 88210 11356805 ~ 11387412 (-) True AMCG00017572
AMCG00017566 mRNA upstream 145733 11414328 ~ 11423945 (-) True AMCG00017566
AMCG00017563 mRNA upstream 235429 11504024 ~ 11506820 (-) True AMCG00017563
AMCG00017571 mRNA upstream 262515 11531110 ~ 11536385 (-) True AMCG00017571
TU113928 other downstream 771002 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 2512199 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 2753151 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 3271511 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 3435514 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 3164563 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 4598352 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 4761807 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 4761861 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 6200010 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile