RNA id: TU114204


Basic Information

Item Value
RNA id TU114204
length 385
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G91553
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12496291 ~ 12499947 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAAAATGGCGGTCCCTGTCCTGTTGCTGGAGCACTGCAGATGCTCACCGTCATGCAATAGAGGAAACCCCGGCTTCGGCAATTCAGAGGATACTGTTGTTGCTATTCCGCTTGTGTTGTTTGCAACTGTGTAACTTGGTTCATGGATCATCAGTTAAAGTAACTTTGATCGCATTCAATGCATTTCACAACTGGAGGTGCCAAGTTTTTTCCTAAAATGTTGAAAACACGATCCAGGAAGataaggaaaaacagacaatCTTTTGCTAAAAAGTAGTATCCCACAAAATTAGGTGATGGAGACCAAATTGAGCTGTAAAAAGAAAgtgacaaaagacaaaaacagtttGGATACATAAGGATACATTGTATGTTTCTCATGAGg

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114187 lncRNA downstream 154556 12341442 ~ 12341735 (-) True G91539
TU114186 lncRNA downstream 184687 12311036 ~ 12311604 (-) False AMCG00017582
TU114103 lncRNA downstream 616954 11877360 ~ 11879337 (-) False AMCG00017569
TU114096 lncRNA downstream 662393 11831433 ~ 11833898 (-) True G91467
TU114095 lncRNA downstream 666598 11828008 ~ 11829693 (-) True G91466
TU114209 lncRNA upstream 6680 12506627 ~ 12509143 (-) True G91556
TU114221 lncRNA upstream 17133 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA upstream 20190 12520137 ~ 12521214 (-) False G91562
TU114237 lncRNA upstream 156122 12656069 ~ 12656333 (-) True G91576
TU114571 lncRNA upstream 1544174 14044121 ~ 14044527 (-) True G91850
AMCG00017582 mRNA downstream 173921 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017579 mRNA downstream 399022 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017565 mRNA downstream 522607 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017568 mRNA downstream 557758 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017567 mRNA downstream 588897 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017587 mRNA upstream 164584 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017589 mRNA upstream 171161 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017591 mRNA upstream 182479 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017588 mRNA upstream 204511 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017590 mRNA upstream 230084 12730031 ~ 12739099 (-) True AMCG00017590
TU113928 other downstream 1999187 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3740384 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3981336 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4499696 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4663699 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1933211 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3367000 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 3530455 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 3530509 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4968658 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile