RNA id: TU114209


Basic Information

Item Value
RNA id TU114209
length 588
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G91556
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12506627 ~ 12509143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCTTCTCCGACAATTGCTAATCTCTTACTATCTTCAGTCCAGGCAATGTCCTTAACCTTTCCTGAAAAGGGCTGATACTCGTACTTCAAAAGATGCTCTTTTTGAGTAGTATCCCAGATCCTGATCTTTCCCGAAACATCTCCAGAGGCAATGTAAAACCCACTGGGCGCATACTTTGCAACAATCACTTGATGTGCATGTTCAGTGTAGATATCTGCAATGGCTGGATTatCAATGTTTCGGATGATGACACTCTTTCCATTGGTGTACAGAAAGTTGTTTCCCTTGGGATCCCCTCCGAGCACCTTCGAAACACCCCTTTCCACCTGAGGGAGGCTAGCAAAGATTTTCTTTAATTCGTAGGACATATTCGCAGACCTTGTATCCCCTCCgaatgaatggaaaaacaagCCTCCCTTTCTCTTGCGTCCCGTCTACCGGCTCGTCCAGCCTCTCCTGATCGCGCTAACACGGAAGCCTGCGCTGCGCTCCCTCGGCTTGGCTGTGCCCATATATAGTAAACTCGCCCGCGACGCGAACAGCTGTAGTCCTCAGCAGACCTGCGTCAACCTGCCTACCGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114204 lncRNA downstream 6680 12496291 ~ 12499947 (-) True G91553
TU114187 lncRNA downstream 164892 12341442 ~ 12341735 (-) True G91539
TU114186 lncRNA downstream 195023 12311036 ~ 12311604 (-) False AMCG00017582
TU114103 lncRNA downstream 627290 11877360 ~ 11879337 (-) False AMCG00017569
TU114096 lncRNA downstream 672729 11831433 ~ 11833898 (-) True G91467
TU114221 lncRNA upstream 7937 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA upstream 10994 12520137 ~ 12521214 (-) False G91562
TU114237 lncRNA upstream 146926 12656069 ~ 12656333 (-) True G91576
TU114571 lncRNA upstream 1534978 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 2250938 14760081 ~ 14764819 (-) False AMCG00017638
AMCG00017582 mRNA downstream 184257 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017579 mRNA downstream 409358 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017565 mRNA downstream 532943 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017568 mRNA downstream 568094 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017567 mRNA downstream 599233 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017587 mRNA upstream 155388 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017589 mRNA upstream 161965 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017591 mRNA upstream 173283 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017588 mRNA upstream 195315 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017590 mRNA upstream 220888 12730031 ~ 12739099 (-) True AMCG00017590
TU113928 other downstream 2009523 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3750720 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 3991672 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4510032 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4674035 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1924015 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3357804 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 3521259 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 3521313 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4959462 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile