RNA id: TU114220


Basic Information

Item Value
RNA id TU114220
length 989
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G91562
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 12517080 ~ 12521214 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGGTTCATAGGTATAGGTGCAGCTGCCACAAATTCAATGTAATTGCCACTTCAGATGCATGCATAACTTTAATATTCtgctttaaatgaaaacactgcacACTTGTCTGCTCTGAAACGGACAAGATTGgtttgaaatgcataaaaagttttttttattatgaaccATTATCACCCATAGGAAAAAATGAGGCAACAAAAAAAGTGAGATACAGGAGCATAGTTATCAGAACAATACAGGATCCGCACTGTGTACACAATATTTCaaatcatataatttatttgcgTTTACCGTTCAAACTTATGATTCTGAATGGTACAGAAATGTTCTGTAGTCACACAACGAGGCAAGAGTTAATCCCATTCCATTTAATGTTAACAAACATCTCTGGTAGAACAGAAGTGAACAGACTACTCTTCAATTGAACCGAGATAAGGCTGTTGCCTCTGGAATGTTGAGCATAGAATTTTTAAAAGCTCCAGAGATCATGTTAAGTGCTTCTTCGTGCAAATAGTTACTGactaaagctttaaaaatacagcatattTAGATATGAACTCCCTGCCATGACTCAGGGTTAACGGTATAGAAACCAGCAGTCATTACAGAAATACTTCGAGAAATGCCATCTTCTACAGTAGTCCTAGTCCCTGAAGATCTGTGCACCTTTTGCGATTAGAATTTGACCGTCCACTGCTTGACACTACAGTCGTGAGAGGCCGTCACGATGGTGTGCTCGTCCAACCATGCCAGTCCACTGACATGATGCAACCGATGGGCACTGGCATCTTCAATCTTTTGTCTGCATCACTGGCTGTCCAGATGAAGACCATCATATCCATGCCCCCACTGGCAAAGTGCTCATTGTCTGGGGACCATGCCAGACACACAACCTTAGCGTGGTGCCCATAGAATACATTCTTTTCCTGGTGGAGGAAAAGGCAAAAATggaagcattacaaaaatgataaaagtttaacattttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114209 lncRNA downstream 10994 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 20190 12496291 ~ 12499947 (-) True G91553
TU114187 lncRNA downstream 178402 12341442 ~ 12341735 (-) True G91539
TU114186 lncRNA downstream 208533 12311036 ~ 12311604 (-) False AMCG00017582
TU114103 lncRNA downstream 640800 11877360 ~ 11879337 (-) False AMCG00017569
TU114237 lncRNA upstream 134855 12656069 ~ 12656333 (-) True G91576
TU114571 lncRNA upstream 1522907 14044121 ~ 14044527 (-) True G91850
TU114757 lncRNA upstream 2238867 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 2278876 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 2403179 14924393 ~ 14925960 (-) True G92024
AMCG00017582 mRNA downstream 197767 12307781 ~ 12322370 (-) True AMCG00017582
AMCG00017579 mRNA downstream 422868 12092470 ~ 12097269 (-) True AMCG00017579
AMCG00017565 mRNA downstream 546453 11955414 ~ 11973684 (-) True AMCG00017565
AMCG00017568 mRNA downstream 581604 11933251 ~ 11938533 (-) True AMCG00017568
AMCG00017567 mRNA downstream 612743 11904838 ~ 11907394 (-) True AMCG00017567
AMCG00017587 mRNA upstream 143317 12664531 ~ 12665835 (-) True AMCG00017587
AMCG00017589 mRNA upstream 149894 12671108 ~ 12677683 (-) True AMCG00017589
AMCG00017591 mRNA upstream 161212 12682426 ~ 12688515 (-) True AMCG00017591
AMCG00017588 mRNA upstream 183244 12704458 ~ 12710164 (-) True AMCG00017588
AMCG00017590 mRNA upstream 208817 12730031 ~ 12739099 (-) True AMCG00017590
TU113928 other downstream 2023033 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 3764230 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 4005182 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 4523542 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 4687545 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 1911944 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 3345733 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 3509188 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 3509242 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 4947391 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile