RNA id: TU114421


Basic Information

Item Value
RNA id TU114421
length 1299
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G91726
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13522641 ~ 13526149 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCTCTTTCAGAAGCCCCAGCAGAACCTCTTGAGACAAACCGCTCCTCGTTCAGCTCCAGACCTGCAGCAGTAAAGATGAAATCCTCCCAGCTGGTCATCGCAGCTCTTCTCCTGGCTGTCCTGTGCTCTTCCACTCTTGGCCAAAATTCAAATTTACCATCGGAATGCTGTTTCTCCTATTATCCCAAGCTAATTCCTAAAAGGTTGATAGAGCAGTATGAGAATACCCGCTCTGACTGCTCACAGCCTGGTGTGATtttgATCTCACTGAAAAAGATTCGCATCTGTGCAAATCCCAGTGTGCAATGGGTGAAGGATATCATGAACAGACTGAATGAAAAACTTCTCCAGTAATTTCCAATGGTACTTTAAACTTTTGATACAAATGTACCTGCAAAGCTATGAATTTAATTGCCTGATCAGCACCTAACTGAAAGAACTAACTGTGAACTGTGTTTCTATCCAGTAATACTTTCCTTTCTCAAATTCAGCTTTGATTATATACAGTTTTACAAATATAGCCAATAACTGAGTCATTATTTCAgccattattttgaatgtattattattattttcttttcatattgatttaaagAAACAACCTAGCTGCACTTTATATTATAATCTCTTGTCATATAATTCAGCCCAGATTTCTCCCTGTGTTGTCTTTTGTGAGCTGTTGACAGTATGTGTCCATTATCCGAAGCAGGGCTCAATCTGGTGGAAACCACGGCTCATTGTCAGTGCCAAATAAAGCTCTTTCATAAACAGTGACAGGAAGATGGTTTTTACTGTCCCTTGCCTCTTCTTCCTCTCAATGTCTACAGTGTTATTCACCCACACTTCAAAACTTAATGCCAGTTCAACCAGACTTATTTGCATCTGCACTCCTGCACTGTGttcattaaacaaatgcatgaattTGAAGTACTCTTCAAGTCCTGTTCAATATATTCCAAACTTCCCAAAATGCTACTGTTTGTTTGAAGATTTGTTTTGCAGGCTAATTAATGTTTGCTTGTGCCCAAACCCTGCTATtaatattcttgaaatatatgTTTCTATACGGTAGGCCTATTTGAACGTGAAAGAGATCTGTAAATCTGTTCAGGTTGTCTTTCATGAGACAGATGccattctgaaattgtagaaaaATCctaatagaaaaaacaaactatgaGTTAGTTAGCTTGCACTTCAATGCAATTGTCTAtatgttgtattattgtaaaaacagcagaagaaaattgtgtgactgtgtaatttttaaataaataacacattttgtaattCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114374 lncRNA upstream 263069 13196895 ~ 13259572 (+) False AMCG00017600
TU114376 lncRNA upstream 275988 13243577 ~ 13246653 (+) False AMCG00017600
TU114365 lncRNA upstream 381763 13140662 ~ 13140878 (+) True G91683
TU114318 lncRNA upstream 461995 13059856 ~ 13060646 (+) True G91649
TU114286 lncRNA upstream 631285 12865187 ~ 12891356 (+) False G91619
TU114422 lncRNA downstream 2632 13528781 ~ 13533210 (+) True G91727
TU114429 lncRNA downstream 300375 13826524 ~ 13830813 (+) False AMCG00017615
TU114438 lncRNA downstream 332068 13858217 ~ 13913757 (+) True G91740
TU114570 lncRNA downstream 517935 14044084 ~ 14044528 (+) True G91849
TU114661 lncRNA downstream 992083 14518232 ~ 14539104 (+) True G91931
AMCG00017613 mRNA upstream 4474 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017611 mRNA upstream 47830 13446501 ~ 13474811 (+) True AMCG00017611
AMCG00017609 mRNA upstream 93467 13428148 ~ 13429174 (+) True AMCG00017609
AMCG00017608 mRNA upstream 100195 13419796 ~ 13422446 (+) True AMCG00017608
AMCG00017610 mRNA upstream 139190 13371615 ~ 13383451 (+) True AMCG00017610
AMCG00017612 mRNA downstream 16312 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017615 mRNA downstream 255117 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017619 mRNA downstream 467442 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017620 mRNA downstream 499487 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017618 mRNA downstream 542625 14068774 ~ 14084436 (+) True AMCG00017618
TU114078 other upstream 1642142 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 3939361 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 4768860 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 4833235 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5389787 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 510727 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 1551176 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1586461 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 2340882 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2608876 16135025 ~ 16135316 (+) True G92130

Expression Profile