RNA id: TU114438


Basic Information

Item Value
RNA id TU114438
length 2678
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G91740
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 13858217 ~ 13913757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtattgtaGTGATCACACGGTCCTATGATTAACCTATTTTTTGGTGATTGGTTTTTATTATACCCCAATTGTAATAAATAGTTTTCAGTCTAAAGAAATGttacagttgtgttttttttttttaacaagaatatCCCACATTGTCACATTTCTATGATAACAGTGATCAGTTTCCATAGGTTTATTTTACCATAAGgcttttattaattcatatacgataataaaattacatttatatatagaaagCTGCTCTAGGACCTCTTTAAAAGGGTTTCTATGATAGTCTGGTTTAAGTATGTGTGGAATTTCACCTTTTGTGTGTTGATAACATTTTGGCTTtaacaattgtaaaatacagGTAATGAATGCAGAGCACACACTGATGTGAAGAGTAAAACATGGTGTAGAAAAATAGTTTGGGGACTTccattgtgacattttaaaattggtggctcaaacaaaagcacaaaaagcATTGTCCCTGGACCTCAAGACGTGTGAATCCTCTCAGACTAACTATTTCTAGGATAACACTGGCTTTTAATTTTAGATCAACGTGATCATTTCATAACAAAGAAAGAATAGGgatactaaatattttatacGTACAAGCCAGTTGTAATgccctttttacattttccgCGTATGTGCTCTCAAACACAGCACATCTGAATATCATGGGAAAGTTCATCATGCCGACTTAAGCTGGCAGGAACACAAAAATAAGCCACAGGTTTCCCGACATGCCACATGCCCCTCTGCAGCGACCTTCATCCCACATGAATGAACCCATACAGcttattgaataatttattgaATAACTGCTATAGATTCACTTAATTTCAAAGTTGAAACCTATTCAAGTTCAGGTATGATGATGTTGTATCGAGACGCAATATTGTTTAAACAGTGTTTCTGCTAGCTCAATGCTAAAGCTTTGAAAAATACCTTTTCtttagatttattattttcttgtgtgtggGGCGTTTGATAGTTTACTAGTTTGATAGTTTTGTAGTGTGGAATGCAACTCTGACTGATGCATTATAACAGAAAATAACCCAATATAAATTAAGAATAgcttttgtattgttcttattgCTGTTTCAGGAGTTCTATAGTTCTAACAGACATACATAGAAGgtaaatagagtttattttggcatAGACTCGCTTGACTAAGGGACCGGTGACCAGGCCTTGAGGACGAGGCCATCCGAACCCCCCACTGggtggaatgagccaaggagctgcagTGTTTAGGGTGAAGGAGGGATGCAAAGAAATGAATGCTGGAAAAGTGCATTTGTTCTCAGATACTTATGCTTGGTAAGGTGGAAGTCATGCACAAGACTGAGGCCGTCTTCCTTCCGAACTTCAGAATTCAATTTGACactatttcacaaaataatccCTCCATTCCTCTGTTCCTGTATCAGTTGTGCCAAAGGTAAGGCATTTCTGTGATTGATAGGAATAACCCAGAGCATTCCCTTCAGTTTATCTCACTCATAGTCTAAGTCTCACTCATGATTTCAAAATCTCACAACTTGGATAAGAAGTAATACTTCAATGAAAAACAGCCAAAAATATAGCCTTCCTTAATTTGAAAAGTACActtgcaagaaaaaatatagtAAGGTGCTTCTATTCaactttttaaatcatttttaaaaggtaatCTTTCCTTATTATCTTTTTGGCCATTACAATTACACGTTCAGTTGCCCTTCACTTAGTCTCCTCTGCtgcacaattaagcaatttatttGATAAAATCAGCTGTGTTAAATGTAGGTGCTTCACTTCCAAAGTGCCAACTGCTAAAAGGATAGAAAAGCTGATTTATTCTGCAGAAGATGGGTTATGACTGGGACCAGGACCCACACTCAGGAAACACACATAACTGGCCATGCAACTTTAGCTAATCTGTATCCCTGCTGGCTTCCACTGAATCTTCTTAATTCAGACCATGATGATATTGCAAGTCAGGATGTATATTGttaatgttcttgtttgttAGACAGGATGGATGCTAAGTGAAGATTTCTATCCTTGGTATTTAAAAAAGGCGTGCTTGCTTCTTTAGATCATTTCTCTTCCACAGAGCTAAGCGATCAAACTCTTCGATTGTCATTCCAAAGACTTTCCAAAAATCCTCTGGAGACAAATGCctctgaaacacaaaaacaaagagagaaatcacacacaagaaaaactaaattaacctAAACAGTCCTCTGAATATATGTTAAGGTAGAGGGCAGAGACAAAAGGTAAATTTATAGCAATcatctaattttaattttaattccaaatTGGACCAACATTCACTTCCATTTgcttattttctaaaacattaaagtcaatttttatttttatttacaaatgcagaataattatcagaaaatgtattttctactgGAAAGCATGGAAGggattatattataataaatgctCAATATCATGCCAAACTTTTTGATTTTTTATCACAACCATATCTTAGTGAAGTCATAGCTGGCAAGGGTGGTTTAAAAGTGTCAATTAAACCATGGCACACTTTCTTCAATACGTCAGAGCGTTACATTAAACATTCTGATCTGAAAttaatgtcaattaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114429 lncRNA upstream 27404 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 325007 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 332068 13522641 ~ 13526149 (+) True G91726
TU114374 lncRNA upstream 598645 13196895 ~ 13259572 (+) False AMCG00017600
TU114376 lncRNA upstream 611564 13243577 ~ 13246653 (+) False AMCG00017600
TU114570 lncRNA downstream 130327 14044084 ~ 14044528 (+) True G91849
TU114661 lncRNA downstream 604475 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 886334 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 1029626 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 1148540 15062297 ~ 15085398 (+) True G92038
AMCG00017615 mRNA upstream 27398 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017612 mRNA upstream 309654 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017613 mRNA upstream 340050 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017611 mRNA upstream 383406 13446501 ~ 13474811 (+) True AMCG00017611
AMCG00017609 mRNA upstream 429043 13428148 ~ 13429174 (+) True AMCG00017609
AMCG00017619 mRNA downstream 79834 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017620 mRNA downstream 111879 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017618 mRNA downstream 155017 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017626 mRNA downstream 215876 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017621 mRNA downstream 221843 14135600 ~ 14151779 (+) True AMCG00017621
TU114078 other upstream 1977718 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4274937 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5104436 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5168811 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 5725363 8132368 ~ 8132854 (+) True G90955
TU114568 other downstream 123119 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 1163568 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1198853 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1953274 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2221268 16135025 ~ 16135316 (+) True G92130

Expression Profile