RNA id: TU114570



Basic Information


Item Value
RNA id TU114570
length 445
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G91849
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14044084 ~ 14044528 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TATAATTTtagaaattcattttaatttatttaattaatgtggaATAAATATTCATGACCAACAttgtaaacatacatatatttggCAATATGGTATTACAATATTACTTTCCCTTAGTGAAACATTTACATGAAATATCAAACATGTTAGGCACATTAtgagaaatgagggaaattatttacaggCCGCTAACTTGATTattacagaaaatagaggagcatctcaatgaaaaccatattcttggagatagtcaacatgggtttagatgaggcagatcatgtcttactaatttattaaattgttttgaacatgcaactgcagctgtagatcatgtgaaagcatatgatatgatatacttagaatTCCAAAAAGCTGTTGATAAGGTTACACACCAAaaactgatcctcagattggaagctgtaggcattcagggtaatgtaaNNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114438 lncRNA upstream 130327 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 213271 13826524 ~ 13830813 (+) False AMCG00017615
TU114422 lncRNA upstream 510874 13528781 ~ 13533210 (+) True G91727
TU114421 lncRNA upstream 517935 13522641 ~ 13526149 (+) True G91726
TU114374 lncRNA upstream 784512 13196895 ~ 13259572 (+) False AMCG00017600
TU114661 lncRNA downstream 473704 14518232 ~ 14539104 (+) True G91931
TU114761 lncRNA downstream 755563 14800091 ~ 14800376 (+) True G92005
TU114777 lncRNA downstream 898855 14943383 ~ 15036381 (+) True G92016
TU114805 lncRNA downstream 1017769 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 1021609 15066137 ~ 15067818 (+) True G92039
AMCG00017620 mRNA upstream 5757 14025636 ~ 14038327 (+) True AMCG00017620
AMCG00017619 mRNA upstream 34828 13993591 ~ 14009256 (+) True AMCG00017619
AMCG00017615 mRNA upstream 213265 13781266 ~ 13830819 (+) True AMCG00017615
AMCG00017612 mRNA upstream 495521 13542461 ~ 13548563 (+) True AMCG00017612
AMCG00017613 mRNA upstream 525917 13501947 ~ 13518167 (+) True AMCG00017613
AMCG00017618 mRNA downstream 24246 14068774 ~ 14084436 (+) True AMCG00017618
AMCG00017626 mRNA downstream 85105 14129633 ~ 14132463 (+) True AMCG00017626
AMCG00017621 mRNA downstream 91072 14135600 ~ 14151779 (+) True AMCG00017621
AMCG00017628 mRNA downstream 423062 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017637 mRNA downstream 681448 14725976 ~ 14746229 (+) True AMCG00017637
TU114568 other upstream 5021 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 2163585 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 4460804 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 5290303 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 5354678 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 1032797 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 1068082 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 1822503 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 2090497 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 3557007 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile