RNA id: TU114571


Basic Information

Item Value
RNA id TU114571
length 407
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G91850
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14044121 ~ 14044527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNttacattaccctgaatgcctacagcttccaatctgaggatcagtttTTGGTGTGTAACCTTATCAACAGCTTTTTGGAattctaagtatatcatatcatatgctttcacatgatctacagctgcagttgcatgttcaaaacaatttaataaattagtaagacatgatctgcctcatctaaacccatgttgactatctccaagaatatggttttcattgagatgctcctctattttctgtaatAATCAAGTTAGCGGcctgtaaataatttccctcatttctcaTAATGTGCCTAACATGTTTGATATTTCATGTAAATGTTTCACTAAGGGAAAGTAATATTGTAATACCATATTGccaaatatatgtatgtttacaaTGTTGGTCATGAATATTTATtccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114237 lncRNA downstream 1387788 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 1522907 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 1522907 12520137 ~ 12521214 (-) False G91562
TU114209 lncRNA downstream 1534978 12506627 ~ 12509143 (-) True G91556
TU114204 lncRNA downstream 1544174 12496291 ~ 12499947 (-) True G91553
TU114757 lncRNA upstream 715554 14760081 ~ 14764819 (-) False AMCG00017638
TU114762 lncRNA upstream 755563 14800090 ~ 14800401 (-) True G92006
TU114785 lncRNA upstream 879866 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 1009936 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 1010765 15055292 ~ 15056623 (-) True G92050
AMCG00017622 mRNA downstream 26529 14009914 ~ 14017592 (-) True AMCG00017622
AMCG00017624 mRNA downstream 73151 13911085 ~ 13970970 (-) True AMCG00017624
AMCG00017617 mRNA downstream 176744 13831346 ~ 13867377 (-) True AMCG00017617
AMCG00017616 mRNA downstream 490317 13549425 ~ 13553804 (-) True AMCG00017616
AMCG00017614 mRNA downstream 501983 13540585 ~ 13542138 (-) True AMCG00017614
AMCG00017623 mRNA upstream 1353 14045880 ~ 14067539 (-) True AMCG00017623
AMCG00017625 mRNA upstream 90384 14134911 ~ 14186450 (-) True AMCG00017625
AMCG00017627 mRNA upstream 227009 14271536 ~ 14278165 (-) True AMCG00017627
AMCG00017631 mRNA upstream 433420 14477947 ~ 14484818 (-) False AMCG00017631
AMCG00017629 mRNA upstream 448002 14492529 ~ 14505953 (-) True AMCG00017629
TU113928 other downstream 3547017 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 5288214 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 5529166 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6047526 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 6211529 7830885 ~ 7832592 (-) True G90937
TU114641 other upstream 388631 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 1822420 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1985875 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1985929 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 3424078 17468605 ~ 17474339 (-) False AMCG00017665

Expression Profile