RNA id: TU114762


Basic Information

Item Value
RNA id TU114762
length 312
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G92006
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14800090 ~ 14800401 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gctggcccatgtggtccaatccaacagacgagctactgtagctcagattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagcgcctacaatgggcacgtgagcatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcatgagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114757 lncRNA downstream 35271 14760081 ~ 14764819 (-) False AMCG00017638
TU114571 lncRNA downstream 755563 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 2143757 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 2278876 12517080 ~ 12521214 (-) True G91562
TU114220 lncRNA downstream 2278876 12520137 ~ 12521214 (-) False G91562
TU114785 lncRNA upstream 123992 14924393 ~ 14925960 (-) True G92024
TU114818 lncRNA upstream 254062 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 254891 15055292 ~ 15056623 (-) True G92050
TU114820 lncRNA upstream 256542 15056943 ~ 15057146 (-) True G92051
TU114844 lncRNA upstream 344134 15144535 ~ 15144735 (-) True G92067
AMCG00017638 mRNA downstream 35258 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017639 mRNA downstream 124015 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 142602 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017634 mRNA downstream 187495 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017635 mRNA downstream 199474 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017646 mRNA upstream 203045 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017645 mRNA upstream 243269 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017647 mRNA upstream 263026 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 275422 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 413096 15213497 ~ 15213745 (-) True AMCG00017660
TU114641 other downstream 320303 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4302986 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6044183 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6285135 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6803495 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 1066546 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1230001 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1230055 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2668204 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3662383 18462784 ~ 18463176 (-) True G92436

Expression Profile