RNA id: TU114777



Basic Information


Item Value
RNA id TU114777
length 967
lncRNA type read_through
GC content 0.35
exon number 2
gene id G92016
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14943383 ~ 15036381 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAGGAAAACACTAGAAATACTTttgcatttacttaattttgtCTCCACAAAAGTAGCAATGAAAATTTGTAGTTctaatgttttcctttcctgAGCTGTATGATAAGTTTGTAGGcaagtaattaaaacacataagTAGTCTACTATATAGGAAAGTGACGATTTGTATCAGATGTCTGTGATATAATAGACAAACCTGGAATGCTATACAGAGGAATTTTGTATCGTATGTTTTAGAATTAGAATATGTGCACTGAGAGAATTACAGTTTGGTATTTAAGAGTTCTgagaatacatgttttacagaaTTGAATTTAAAGACGCCAAAGTGAGGACAGGTAGAAGTAACTGATTTCATAAGCACAGGGAAACCGTTGTTGTTCatgtttcaaatacattaaaaatgtgtaatgacTGACACGCACACAAGCTAACATTTCCTAGAGCAGGATTAATGCAGTGTTACACTATAATTTTAAACCATCAGGCAGGGTACTGATTTTCATCAAATGTCAGGATTAAATCAATTATAGTTTACAGGTACAGTAAGAGTAAGGATTCACTGAGTCAGTAGTGATCTAGCTTTCGTATTCAACTGCAGATTTCAGTGGCACTCTGAGATCTGTTGAGTTGCATCCCCATCACTCCAGCCCATAGTAGGAAATCTAAGCATCTCCAAGGAAGGGTTTGTTGCCATGTTTTCAGGCATTCATAGCCTTAGATCTGTGGATTATTTTCTGCACATGATCAATTGAGCAGGTGAGCCACTGTGGCGAATGTTTACAAGAAGCTGTTTGCAGAGTGTTTGTGTATTATAGGTTTTGTcgaatgtagttttttttaggTGTGTGTAGGAATGCAACTTTGAAAATTGatgaaaaaatgtgaaaatgacgACAGCAAGCCTTTATACTCCTAAAGACTTATGAGAGGCTTCTCTTGTACTGtataccaataaataataaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114761 lncRNA upstream 143007 14800091 ~ 14800376 (+) True G92005
TU114661 lncRNA upstream 404279 14518232 ~ 14539104 (+) True G91931
TU114570 lncRNA upstream 898855 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 1029626 13858217 ~ 13913757 (+) True G91740
TU114429 lncRNA upstream 1112570 13826524 ~ 13830813 (+) False AMCG00017615
TU114805 lncRNA downstream 25916 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA downstream 29756 15066137 ~ 15067818 (+) True G92039
TU114822 lncRNA downstream 51751 15088132 ~ 15090475 (+) False AMCG00017651
TU114826 lncRNA downstream 56884 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA downstream 56884 15093265 ~ 15106835 (+) False AMCG00017652
AMCG00017641 mRNA upstream 11788 14922262 ~ 14931595 (+) True AMCG00017641
AMCG00017640 mRNA upstream 118169 14824534 ~ 14825214 (+) True AMCG00017640
AMCG00017636 mRNA upstream 178556 14748681 ~ 14764827 (+) True AMCG00017636
AMCG00017637 mRNA upstream 197154 14725976 ~ 14746229 (+) True AMCG00017637
AMCG00017628 mRNA upstream 470023 14467590 ~ 14473360 (+) True AMCG00017628
AMCG00017644 mRNA downstream 924 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017643 mRNA downstream 16985 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017651 mRNA downstream 51766 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017652 mRNA downstream 56810 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017650 mRNA downstream 73041 15109422 ~ 15116030 (+) True AMCG00017650
TU114568 other upstream 904320 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3062884 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5360103 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6189602 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 6253977 8687697 ~ 8689406 (+) False AMCG00017526
TU114814 other downstream 40944 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 76229 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 830650 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1098644 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2565154 17601535 ~ 17606208 (+) False AMCG00017668

Expression Profile