RNA id: TU114785


Basic Information

Item Value
RNA id TU114785
length 1568
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G92024
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 14924393 ~ 14925960 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGCTGTGAGGTTGCATTGCACTGTAAGGCATACCCTGATTCCGTGCTTTCTGTTTCATgaaaagtatgcatttttgttctTCACTCAGGTGAGGGGCCTGAGCAGATATCTGCGCTTGGCTCTGTGGCGGCacctgttgctgctgctgctgttgctgctgcgcTGCCTGCTGCTGCATGTAGGGCATCATGGGGTTCTTATTGGGGTTGGCCATCGGAGGGGTCATCCTCTGACCCATGTGCTCAACTGCGCTGAAATGGGTTAGGGGCTTAGTGTTGCTGTAGGACAGCATAGCGGCCTGTTGCTTGTTAATAGTGTTTTGGCCCATGCTGTTTGGCTGTTGGTTGATCATGTTCATGTGGTTTTGAGGGAGGTAGTTATTCATAGTGGCCTTCTGAGGGTTGCTTGCCATTGAAGGCACCATAGGGTTTGGGGAGTTAAAGGCTTGTGGATACACCATTGGGCTATTTGGTTTGTCAGGGTTGAAGGGTCCCCCATATGGGCTGGTTGGAGGGCCAGCAGGGGACCAGTTGGGTGCTTGCGTCTGCTGGATGAGTTTTGCCCTTTGCTGCTGCTGAGCAGCCATCTGCTTCAACTGCTCAGCTGGAGACAAGTCTGGAGTGGATGATGGAACTGGGACTGGGACTGATACTGGGACGATTCCCCCTTGGCCTGCAGCTGCTGCCACTGCTCCAGAACCCGTGCCTGGTACTACTCCAGACCCTGGGTTCATCAAAATACCATTCCCAGGCCTTGGTGGTTGTGTCTGGGCCTGGTTTGGAGTTTGTGGTGACCGGGCCACACAGTTTGCTGGTGAGCCTGCTGCCATTCCAACAGTGGGAGGCTGCTGTAGTGGCTGCTGGGGAGGCGTGCTGTTGGATGCGGTGTTGAACTGAGGCCCGGAAGAGGAAGGTCGTACTTGTGGGGAACCCATAGGCATCTGGTTGTtcgggggcgggggtgggggaggcGGGGCGGGTTCCTGCAGGAGAGGGGTTTGGGCAGCTGGCCTAGTGAACTCTACCTCCTTTTTGTCTTCAAAGTCTTCATTGAATAGGTCGTGCATGTCATCTTCAGCCACAGTATTGGCCAGCTCATCAATAAGCTCCTGCCATTCCTGGTCATTAAGGTTGATGTCCGAGAAGAGCTTGTTCTGGTTCGAGAGCGAGCTGTCAGGGGACTCGATCCCTGTGGCATCATCTAAGGGCTCTGGCTTCATATCCTTACTCTGAATTAGACTGAATCCATCGTCCAAGGTGCCATTGACCTGCAGCTTGATATCCTGCAACCCTCCATTTTTGCCCAGGTCATCCGGCCGGCCGGGGACATGGTTGTTGCCACTGTTGGCATTGTTCATGGGTAATGTAGGCTTGATATCAATCTGGTGAAGGGGTGATACAGAGGGCACAGGGGGCCCATTACTAGGCAATCCTGCCAATGAGTCCAGGCTGGGCCCTTCCTTTCGGAGACGTTTTGTATTTGGTGAAAAATTCCCATCACAAATACCATTCTGGTCCCCATTCAGAGGTGATCGCGCACTGTCCAGTTTCCTTTTCACAGTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114762 lncRNA downstream 123992 14800090 ~ 14800401 (-) True G92006
TU114757 lncRNA downstream 159574 14760081 ~ 14764819 (-) False AMCG00017638
TU114571 lncRNA downstream 879866 14044121 ~ 14044527 (-) True G91850
TU114237 lncRNA downstream 2268060 12656069 ~ 12656333 (-) True G91576
TU114221 lncRNA downstream 2403179 12517080 ~ 12521214 (-) True G91562
TU114818 lncRNA upstream 128503 15054463 ~ 15054684 (-) True G92049
TU114819 lncRNA upstream 129332 15055292 ~ 15056623 (-) True G92050
TU114820 lncRNA upstream 130983 15056943 ~ 15057146 (-) True G92051
TU114844 lncRNA upstream 218575 15144535 ~ 15144735 (-) True G92067
TU114846 lncRNA upstream 236358 15162318 ~ 15162712 (-) True G92069
AMCG00017638 mRNA downstream 159561 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017639 mRNA downstream 248318 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 266905 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017634 mRNA downstream 311798 14608910 ~ 14612595 (-) True AMCG00017634
AMCG00017635 mRNA downstream 323777 14599283 ~ 14600616 (-) True AMCG00017635
AMCG00017646 mRNA upstream 77486 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017645 mRNA upstream 117710 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017647 mRNA upstream 137467 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 149863 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 287537 15213497 ~ 15213745 (-) True AMCG00017660
TU114641 other downstream 444606 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4427289 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6168486 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6409438 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 6927798 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 940987 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 1104442 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 1104496 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2542645 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3536824 18462784 ~ 18463176 (-) True G92436

Expression Profile