RNA id: TU114805



Basic Information


Item Value
RNA id TU114805
length 1161
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G92038
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15062297 ~ 15085398 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agttttattGCATTGTATATTTGGTACCTCTTATGTGTTTGACAACAAGGGTATTAACTTTACAACTGAAAGAAAGAAGCTGATCTGGTtctgaaaaaaaagtaattggcCCCCATTCTGAAAAGGTACAAAGTCTGGGGCTTGTCTGAAACTGCTGAACGAGAAATATTCTCTTTTTAGAAAGACAGGGCTTCAagtattacaaaagaaaaaaaaatctttacgCTGTGGAAAATATCCAGAGGTATCATTAGATTAATATGCAGACGATACATCTGCACACATCTGGTGAGGACAGTCTGCAAAGGAACATGACTGCCAATCCTTTTTTTGACAACTAAAAACTATCAAAAAAAAGGAACAGTTCTCCTCCTGAGCAGTAAATATATGTTACCATTTATTCTGTGTGTATgcatgggtgtgtgtggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGTCTCAAATAATTCAATATGGTTGACAAATGCCTGCTTTTTAAACTAAGATATCAGCTGATGACTAATATATTTGATAAAATTCCATCTCTTTTGAATCTGACAAACAGCGAAAAAGAAACCGTAATATACTGTGATTCTGAAATTGCTCAAAAGATGCAGTTTTATCATACACCACCCATTTCACTGTAACCTTAAAAAGAAGGCAAAGCAATGCATTTGCCACTCATACTGTACTCCAGGTAACCATTTACCTCCATTATCTGTGGTAAACATTATCTTTTTAGCTTCCTATGGCCCTCTGTGTAGTTCCTGCAGCACAGCTTATCAATtcgtttcatttcatttttcttttttaatggtttgtgCTCAGAATAGGAATCCAGTGCTAAGGAGTATGAACTGCTCTCCAAGATTAAACTGATCTCCTTCTCAGTTTAGCAGTGTTTTTGGCACGCACCTACCCTGTTATTTGTAACAgcctattattttttattattctttataaattactttaaaaacatggGAAGTAGATATTAGGATACAGTAAGCCTAATAGAACTGCTAATACCTCTTAGAATAACCCGTTGCTATTTGTGTCCTGATTatgttatcatttttatttttgtttagaagTAGTctgcaagattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaATAAAGATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114777 lncRNA upstream 25916 14943383 ~ 15036381 (+) True G92016
TU114761 lncRNA upstream 261921 14800091 ~ 14800376 (+) True G92005
TU114661 lncRNA upstream 523193 14518232 ~ 14539104 (+) True G91931
TU114570 lncRNA upstream 1017769 14044084 ~ 14044528 (+) True G91849
TU114438 lncRNA upstream 1148540 13858217 ~ 13913757 (+) True G91740
TU114822 lncRNA downstream 2734 15088132 ~ 15090475 (+) False AMCG00017651
TU114826 lncRNA downstream 7867 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA downstream 7867 15093265 ~ 15106835 (+) False AMCG00017652
TU114831 lncRNA downstream 76932 15162330 ~ 15162692 (+) True G92059
TU114878 lncRNA downstream 442163 15527561 ~ 15527878 (+) True G92095
AMCG00017643 mRNA upstream 16 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017644 mRNA upstream 19498 15037305 ~ 15042799 (+) True AMCG00017644
AMCG00017642 mRNA upstream 28792 15021731 ~ 15033505 (+) True AMCG00017642
AMCG00017649 mRNA upstream 66231 14980564 ~ 14996066 (+) True AMCG00017649
AMCG00017641 mRNA upstream 130702 14922262 ~ 14931595 (+) True AMCG00017641
AMCG00017651 mRNA downstream 2749 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017652 mRNA downstream 7793 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017650 mRNA downstream 24024 15109422 ~ 15116030 (+) True AMCG00017650
AMCG00017653 mRNA downstream 46025 15131423 ~ 15156693 (+) True AMCG00017653
AMCG00017655 mRNA downstream 108304 15193702 ~ 15194164 (+) True AMCG00017655
TU114568 other upstream 1023234 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3181798 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5479017 9519773 ~ 9583280 (+) True G91281
TU113671 other upstream 6308516 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 6372891 8687697 ~ 8689406 (+) False AMCG00017526
TU114828 other downstream 27212 15112610 ~ 15116031 (+) False AMCG00017650
TU114906 other downstream 781633 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 1049627 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2516137 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3987840 19073238 ~ 19073662 (+) True G92538

Expression Profile