RNA id: TU114820


Basic Information

Item Value
RNA id TU114820
length 204
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G92051
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15056943 ~ 15057146 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAACTCACCTGCTGACGATGGCCATGACTCGGTGGTAGTAGGCAGTGCCCTTGTCTCTGGGCAAAAGCAGAGCTGCCATGCCCCCTGTGGCCAGTGCCCCACGTCGGTGGCAGGTCTGCACCAGCAGCTCCATGTAGCTCTTCAGGAACAGCTTCTCCATGTTCACATATTTGCTTCGGTCTGGCAGCAGGAAAGATGGTCG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114819 lncRNA downstream 320 15055292 ~ 15056623 (-) True G92050
TU114818 lncRNA downstream 2259 15054463 ~ 15054684 (-) True G92049
TU114785 lncRNA downstream 130983 14924393 ~ 14925960 (-) True G92024
TU114762 lncRNA downstream 256542 14800090 ~ 14800401 (-) True G92006
TU114757 lncRNA downstream 292124 14760081 ~ 14764819 (-) False AMCG00017638
TU114844 lncRNA upstream 87389 15144535 ~ 15144735 (-) True G92067
TU114846 lncRNA upstream 105172 15162318 ~ 15162712 (-) True G92069
TU114876 lncRNA upstream 428111 15485257 ~ 15485762 (-) True G92093
TU114916 lncRNA upstream 1078234 16135380 ~ 16135707 (-) True G92132
TU114920 lncRNA upstream 1109493 16166639 ~ 16182063 (-) True G92134
AMCG00017645 mRNA downstream 4280 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017646 mRNA downstream 44175 15003446 ~ 15012768 (-) True AMCG00017646
AMCG00017638 mRNA downstream 292111 14760068 ~ 14764832 (-) True AMCG00017638
AMCG00017639 mRNA downstream 380868 14664881 ~ 14676075 (-) True AMCG00017639
AMCG00017632 mRNA downstream 399455 14614561 ~ 14657488 (-) True AMCG00017632
AMCG00017647 mRNA upstream 6281 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017648 mRNA upstream 18677 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017660 mRNA upstream 156351 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017659 mRNA upstream 166356 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017661 mRNA upstream 1728522 16785668 ~ 16797841 (-) True AMCG00017661
TU114641 other downstream 577156 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 4559839 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 6301036 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 6541988 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 7060348 7992137 ~ 7996595 (-) True G90939
TU114907 other upstream 809801 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 973256 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 973310 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 2411459 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 3405638 18462784 ~ 18463176 (-) True G92436

Expression Profile