RNA id: TU114831


Basic Information

Item Value
RNA id TU114831
length 363
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G92059
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15162330 ~ 15162692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagatctaggagtctatgtggactcctcactttctccatccaagcaatgtggggaagcaataaaaaaggcaaacacaatgctagggtatattgtcaaaagtgtagaatttaaaacaagggcagtaatgttcagactgtacaatgcactagttagagctcatctggatactgtgtacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114826 lncRNA upstream 55495 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA upstream 55495 15093265 ~ 15106835 (+) False AMCG00017652
TU114822 lncRNA upstream 71855 15088132 ~ 15090475 (+) False AMCG00017651
TU114805 lncRNA upstream 76932 15062297 ~ 15085398 (+) True G92038
TU114807 lncRNA upstream 94512 15066137 ~ 15067818 (+) True G92039
TU114878 lncRNA downstream 364869 15527561 ~ 15527878 (+) True G92095
TU114917 lncRNA downstream 1003950 16166642 ~ 16182070 (+) True G92133
TU114933 lncRNA downstream 1152362 16315054 ~ 16315523 (+) True G92145
TU114935 lncRNA downstream 1267760 16430452 ~ 16430712 (+) True G92147
TU114939 lncRNA downstream 1440959 16603651 ~ 16603919 (+) True G92151
AMCG00017653 mRNA upstream 5637 15131423 ~ 15156693 (+) True AMCG00017653
AMCG00017650 mRNA upstream 46300 15109422 ~ 15116030 (+) True AMCG00017650
AMCG00017652 mRNA upstream 59336 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017651 mRNA upstream 71501 15088147 ~ 15090829 (+) True AMCG00017651
AMCG00017643 mRNA upstream 100049 15053366 ~ 15062281 (+) True AMCG00017643
AMCG00017655 mRNA downstream 31010 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017654 mRNA downstream 44917 15207609 ~ 15212259 (+) True AMCG00017654
AMCG00017657 mRNA downstream 436727 15599419 ~ 15605110 (+) True AMCG00017657
AMCG00017658 mRNA downstream 447291 15609983 ~ 15794447 (+) True AMCG00017658
AMCG00017656 mRNA downstream 666237 15828929 ~ 15835050 (+) True AMCG00017656
TU114828 other upstream 46299 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 78052 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 1123267 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3281831 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5579050 9519773 ~ 9583280 (+) True G91281
TU114906 other downstream 704339 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 972333 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2438843 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3910546 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 4239394 19402086 ~ 19411990 (+) False AMCG00017710

Expression Profile