RNA id: TU114878


Basic Information

Item Value
RNA id TU114878
length 318
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G92095
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15527561 ~ 15527878 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctgacacctttctatcagaaccagcattaactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcactccccacgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacttttgatagttACTGACCATTGCAGAGCGGgtacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacacttgcccatttttcctgcttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114831 lncRNA upstream 364869 15162330 ~ 15162692 (+) True G92059
TU114826 lncRNA upstream 420726 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA upstream 420726 15093265 ~ 15106835 (+) False AMCG00017652
TU114822 lncRNA upstream 437086 15088132 ~ 15090475 (+) False AMCG00017651
TU114805 lncRNA upstream 442163 15062297 ~ 15085398 (+) True G92038
TU114917 lncRNA downstream 638764 16166642 ~ 16182070 (+) True G92133
TU114933 lncRNA downstream 787176 16315054 ~ 16315523 (+) True G92145
TU114935 lncRNA downstream 902574 16430452 ~ 16430712 (+) True G92147
TU114939 lncRNA downstream 1075773 16603651 ~ 16603919 (+) True G92151
TU114940 lncRNA downstream 1135988 16663866 ~ 16664235 (+) True G92152
AMCG00017654 mRNA upstream 315302 15207609 ~ 15212259 (+) True AMCG00017654
AMCG00017655 mRNA upstream 333397 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017653 mRNA upstream 370868 15131423 ~ 15156693 (+) True AMCG00017653
AMCG00017650 mRNA upstream 411531 15109422 ~ 15116030 (+) True AMCG00017650
AMCG00017652 mRNA upstream 424567 15093191 ~ 15102994 (+) False AMCG00017652
AMCG00017657 mRNA downstream 71541 15599419 ~ 15605110 (+) True AMCG00017657
AMCG00017658 mRNA downstream 82105 15609983 ~ 15794447 (+) True AMCG00017658
AMCG00017656 mRNA downstream 301051 15828929 ~ 15835050 (+) True AMCG00017656
AMCG00017662 mRNA downstream 1867853 17395731 ~ 17428335 (+) True AMCG00017662
AMCG00017666 mRNA downstream 1981373 17509251 ~ 17511291 (+) True AMCG00017666
TU114828 other upstream 411530 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 443283 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 1488498 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3647062 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 5944281 9519773 ~ 9583280 (+) True G91281
TU114906 other downstream 339153 15867031 ~ 15867634 (+) True G92123
TU114914 other downstream 607147 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 2073657 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3545360 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 3874208 19402086 ~ 19411990 (+) False AMCG00017710

Expression Profile