RNA id: TU114906



Basic Information


Item Value
RNA id TU114906
length 604
RNA type TUCP
GC content 0.50
exon number 1
gene id G92123
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15867031 ~ 15867634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caggcgggctgtcatgtgccttttactgaggagtggcttccgtctggccaccctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacatgctggagctctgtcagagtgaccatcgggttcttggtcacctccctgacgaaggcccttctcccccaatcgctcagtttggccgggcggccagctctaggaagagtcctggtggttccaaacttcttccatttatggatgatggaggccactgtgctcattgggaccttcaatgctgcagaaatgtttttgtacCCTTCCCccgatctgtgcctcgatacaatcctgtctcagcggtctacagacaattccttggacttcatggcttggtttgtgctctgacatgcactgttaactgtgggaccttatatagacaagtgtgtgcctttccaaatcatgtccaatcaactgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcagtggaaacaggatacacctgagctcaattttgagtgtcatggcaaaggctgtgaatacttatgtacatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114878 lncRNA upstream 339153 15527561 ~ 15527878 (+) True G92095
TU114831 lncRNA upstream 704339 15162330 ~ 15162692 (+) True G92059
TU114826 lncRNA upstream 760196 15093265 ~ 15106835 (+) True AMCG00017652
TU114827 lncRNA upstream 760196 15093265 ~ 15106835 (+) False AMCG00017652
TU114822 lncRNA upstream 776556 15088132 ~ 15090475 (+) False AMCG00017651
TU114917 lncRNA downstream 299008 16166642 ~ 16182070 (+) True G92133
TU114933 lncRNA downstream 447420 16315054 ~ 16315523 (+) True G92145
TU114935 lncRNA downstream 562818 16430452 ~ 16430712 (+) True G92147
TU114939 lncRNA downstream 736017 16603651 ~ 16603919 (+) True G92151
TU114940 lncRNA downstream 796232 16663866 ~ 16664235 (+) True G92152
AMCG00017656 mRNA upstream 31981 15828929 ~ 15835050 (+) True AMCG00017656
AMCG00017658 mRNA upstream 72584 15609983 ~ 15794447 (+) True AMCG00017658
AMCG00017657 mRNA upstream 261921 15599419 ~ 15605110 (+) True AMCG00017657
AMCG00017654 mRNA upstream 654772 15207609 ~ 15212259 (+) True AMCG00017654
AMCG00017655 mRNA upstream 672867 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017662 mRNA downstream 1528097 17395731 ~ 17428335 (+) True AMCG00017662
AMCG00017666 mRNA downstream 1641617 17509251 ~ 17511291 (+) True AMCG00017666
AMCG00017667 mRNA downstream 1710421 17578055 ~ 17585825 (+) True AMCG00017667
AMCG00017668 mRNA downstream 1734158 17601792 ~ 17620033 (+) True AMCG00017668
AMCG00017673 mRNA downstream 1808975 17676609 ~ 17692389 (+) True AMCG00017673
TU114828 other upstream 751000 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 782753 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 1827968 14036876 ~ 14039063 (+) False AMCG00017620
TU114078 other upstream 3986532 11879614 ~ 11880499 (+) True G91452
TU113887 other upstream 6283751 9519773 ~ 9583280 (+) True G91281
TU114914 other downstream 267391 16135025 ~ 16135316 (+) True G92130
TU115097 other downstream 1733901 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 3205604 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 3534452 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 3553676 19421310 ~ 19423679 (+) False AMCG00017710

Expression Profile