RNA id: TU114907


Basic Information

Item Value
RNA id TU114907
length 701
RNA type TUCP
GC content 0.48
exon number 1
gene id G92124
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 15866947 ~ 15867647 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaaaacaagcacatgtacataagtattcacagcctttgccatgacactcaaaattgagctcaggtgtatcctgtttccactgatcatccttgagatgtttctacaacttgattggagtccacctgtggtaaattcagttgattggacatgatttggaaaggcacacacttgtctatataaggtcccacagttaacagtgcatgtcagagcacaaaccaagccatgaagtccaaggaattgtctgtagaccgctgagacaggattgtatcgaggcacagatcggGGGAAGGgtacaaaaacatttctgcagcattgaaggtcccaatgagcacagtggcctccatcatccataaatggaagaagtttggaaccaccaggactcttcctagagctggccgcccggccaaactgagcgattgggggagaagggccttcgtcagggaggtgaccaagaacccgatggtcactctgacagagctccagcatgtctctgtggagagaggagaaccttccagaagaacaaccatctctgcagcactccaccaatcaggcctgtatggtagggtggccagacggaagccactcctcagtaaaaggcacatgacagcccgcctgaagtttgccaaaaggcacctgaaggactctcagaccatgagaaacaaaattctctggtctgatgaaacaaagattgaactcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114876 lncRNA downstream 381185 15485257 ~ 15485762 (-) True G92093
TU114846 lncRNA downstream 704235 15162318 ~ 15162712 (-) True G92069
TU114844 lncRNA downstream 722212 15144535 ~ 15144735 (-) True G92067
TU114820 lncRNA downstream 809801 15056943 ~ 15057146 (-) True G92051
TU114819 lncRNA downstream 810324 15055292 ~ 15056623 (-) True G92050
TU114916 lncRNA upstream 267733 16135380 ~ 16135707 (-) True G92132
TU114920 lncRNA upstream 298992 16166639 ~ 16182063 (-) True G92134
TU114921 lncRNA upstream 314482 16182129 ~ 16182328 (-) True G92135
TU114934 lncRNA upstream 447398 16315045 ~ 16315522 (-) True G92146
TU114936 lncRNA upstream 562809 16430456 ~ 16430711 (-) True G92148
AMCG00017659 mRNA downstream 632178 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 653202 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017648 mRNA downstream 786641 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 792428 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017645 mRNA downstream 814284 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017661 mRNA upstream 918021 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017663 mRNA upstream 1519837 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017664 mRNA upstream 1557764 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 1600959 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017670 mRNA upstream 1647236 17514883 ~ 17531328 (-) True AMCG00017670
TU114641 other downstream 1387160 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 5369843 10361300 ~ 10497104 (-) True AMCG00017556
TU113686 other downstream 7111040 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 7351992 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 7870352 7992137 ~ 7996595 (-) True G90939
TU114913 other upstream 162755 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 162809 16030456 ~ 16030905 (-) False G92129
TU115048 other upstream 1600958 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 2595137 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 3545340 19412987 ~ 19419356 (-) False G92591

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022266 False 3976 lncRNA 0.36 1 NC_007127.7 46806237 ~ 46810212 (-)
grasscarp (Ctenopharyngodon idella) TU330387 True 455 lncRNA 0.34 1 CI01000080 2030168 ~ 2030622 (+)
rainbow trout (Oncorhynchus mykiss) TU330387 True 2553 lncRNA 0.42 2 NC_048567.1 69871693 ~ 69946132 (+)
eurasian perch (Perca fluviatilis) TU314015 True 1013 TUCP 0.47 2 NC_053135.1 2096875 ~ 2098749 (+)
mexican tetra (Astyanax mexicanus) TU314015 True 2424 TUCP 0.43 3 NW_019170761.1 18507 ~ 22440 (+)