RNA id: TU114934


Basic Information

Item Value
RNA id TU114934
length 478
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G92146
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 16315045 ~ 16315522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTCAGTGCATTACGAGCCTGGGAAGGTaagtcaccgacacaatgccagatcgtttgtcttcagtttatttttgcaacaacacacacttttatacatgtcagaaaTCTGATTGCCAAGAGTTCCGGGGCAGGTACATACagatattacaaacatattacagatctagttgctaggcagacatgaAATGTGTTCGATCTCATAAGTCATAACATTCATAACATACTCAAGAGTTTCAGTTGACACAGCTGCATGGTTTGCCTAGTAGTAGATGACGTGGGATTACAgatcttatttctggtttgtctgaagagcaggatgtatattgtttatgttattagCTCTGAGttgttcctcaaaatataatctaaatatAGGGAGTTTTGcggtttgacatttccaagataGAGTCAAGAAGGCCATGAGTTCAATTGTCTAGACcttcacagaaatagttatgcGCGAGTATGATATTTATG

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114921 lncRNA downstream 132717 16182129 ~ 16182328 (-) True G92135
TU114920 lncRNA downstream 132982 16166639 ~ 16182063 (-) True G92134
TU114916 lncRNA downstream 179338 16135380 ~ 16135707 (-) True G92132
TU114876 lncRNA downstream 829283 15485257 ~ 15485762 (-) True G92093
TU114846 lncRNA downstream 1152333 15162318 ~ 15162712 (-) True G92069
TU114936 lncRNA upstream 114934 16430456 ~ 16430711 (-) True G92148
TU114944 lncRNA upstream 440908 16756430 ~ 16756667 (-) True G92156
TU114968 lncRNA upstream 610972 16926494 ~ 16926810 (-) True G92176
TU114971 lncRNA upstream 681698 16997220 ~ 16997504 (-) True G92179
TU114975 lncRNA upstream 845723 17161245 ~ 17161645 (-) True G92183
AMCG00017659 mRNA downstream 1080276 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 1101300 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017648 mRNA downstream 1234739 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 1240526 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017645 mRNA downstream 1262382 15043670 ~ 15052663 (-) True AMCG00017645
AMCG00017661 mRNA upstream 470146 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017663 mRNA upstream 1071962 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017664 mRNA upstream 1109889 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 1153084 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017670 mRNA upstream 1199361 17514883 ~ 17531328 (-) True AMCG00017670
TU114913 other downstream 284140 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 284140 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 447398 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 1835258 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 5817941 10361300 ~ 10497104 (-) True AMCG00017556
TU115048 other upstream 1153083 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 2147262 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 3097465 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 3102679 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 7002604 23318126 ~ 23321954 (-) True AMCG00017780

Expression Profile