RNA id: TU114968


Basic Information

Item Value
RNA id TU114968
length 317
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G92176
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 16926494 ~ 16926810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaattgtggttcaagtaatgataggatctttcttgGCActtaaacgtaaatgagactgatatatatataacgagaagttacctgacataaatactaacctgtgtagttatttaatgtctgactaacaatactaatgagagactcaccttcgtcttactaaccggtattgtagtcaatgtgtttataaccttttttgtttaacgatttgtgtgttatcatatgcgatcccatggtctttgatttggtcacggaagtgatttgtctttgatttgttgatctagagttgaattttaattagtttttcccttttgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114944 lncRNA downstream 169827 16756430 ~ 16756667 (-) True G92156
TU114936 lncRNA downstream 495783 16430456 ~ 16430711 (-) True G92148
TU114934 lncRNA downstream 610972 16315045 ~ 16315522 (-) True G92146
TU114921 lncRNA downstream 744166 16182129 ~ 16182328 (-) True G92135
TU114920 lncRNA downstream 744431 16166639 ~ 16182063 (-) True G92134
TU114971 lncRNA upstream 70410 16997220 ~ 16997504 (-) True G92179
TU114975 lncRNA upstream 234435 17161245 ~ 17161645 (-) True G92183
TU114993 lncRNA upstream 325620 17252430 ~ 17252630 (-) True G92200
TU115016 lncRNA upstream 461817 17388627 ~ 17394721 (-) False AMCG00017663
TU115017 lncRNA upstream 461817 17388627 ~ 17395049 (-) False AMCG00017663
AMCG00017661 mRNA downstream 128653 16785668 ~ 16797841 (-) True AMCG00017661
AMCG00017659 mRNA downstream 1691725 15223502 ~ 15234769 (-) True AMCG00017659
AMCG00017660 mRNA downstream 1712749 15213497 ~ 15213745 (-) True AMCG00017660
AMCG00017648 mRNA downstream 1846188 15075823 ~ 15080306 (-) True AMCG00017648
AMCG00017647 mRNA downstream 1851975 15063427 ~ 15074519 (-) True AMCG00017647
AMCG00017663 mRNA upstream 460674 17387484 ~ 17394619 (-) True AMCG00017663
AMCG00017664 mRNA upstream 498601 17425411 ~ 17462601 (-) True AMCG00017664
AMCG00017665 mRNA upstream 541796 17468606 ~ 17487497 (-) True AMCG00017665
AMCG00017670 mRNA upstream 588073 17514883 ~ 17531328 (-) True AMCG00017670
AMCG00017671 mRNA upstream 631634 17558444 ~ 17575772 (-) True AMCG00017671
TU114913 other downstream 895589 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 895589 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1058847 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 2446707 14433158 ~ 14479787 (-) True AMCG00017631
TU113928 other downstream 6429390 10361300 ~ 10497104 (-) True AMCG00017556
TU115048 other upstream 541795 17468605 ~ 17474339 (-) False AMCG00017665
TU115289 other upstream 1535974 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 2486177 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 2491391 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 6391316 23318126 ~ 23321954 (-) True AMCG00017780

Expression Profile