RNA id: TU114970


Basic Information

Item Value
RNA id TU114970
length 242
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G92178
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 16997218 ~ 16997459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTgatatcatatgcgatcccatggtctttgatttggtcatgaaagtgatttgtctttgatttgttgatctagagtgaattttaattagtttttcccttttgtataattagtgtagtgctacatttagtcttgtttttgaatacatttgacaatttatatctttggaattggtgtctgtgtccaattattacagaaattgagttctacaagattccaggattcgtgataaggtgatactata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114959 lncRNA upstream 87304 16841453 ~ 16909914 (+) True G92169
TU114940 lncRNA upstream 332983 16663866 ~ 16664235 (+) True G92152
TU114939 lncRNA upstream 393299 16603651 ~ 16603919 (+) True G92151
TU114935 lncRNA upstream 566506 16430452 ~ 16430712 (+) True G92147
TU114933 lncRNA upstream 681695 16315054 ~ 16315523 (+) True G92145
TU114974 lncRNA downstream 163786 17161245 ~ 17161645 (+) True G92182
TU114990 lncRNA downstream 244357 17241816 ~ 17242064 (+) True G92197
TU115031 lncRNA downstream 442201 17439660 ~ 17440209 (+) True G92228
TU115032 lncRNA downstream 443199 17440658 ~ 17440964 (+) True G92229
TU115033 lncRNA downstream 448166 17445625 ~ 17445993 (+) True G92230
AMCG00017656 mRNA upstream 1162168 15828929 ~ 15835050 (+) True AMCG00017656
AMCG00017658 mRNA upstream 1202771 15609983 ~ 15794447 (+) True AMCG00017658
AMCG00017657 mRNA upstream 1392108 15599419 ~ 15605110 (+) True AMCG00017657
AMCG00017654 mRNA upstream 1784959 15207609 ~ 15212259 (+) True AMCG00017654
AMCG00017655 mRNA upstream 1803054 15193702 ~ 15194164 (+) True AMCG00017655
AMCG00017662 mRNA downstream 398272 17395731 ~ 17428335 (+) True AMCG00017662
AMCG00017666 mRNA downstream 511792 17509251 ~ 17511291 (+) True AMCG00017666
AMCG00017667 mRNA downstream 580596 17578055 ~ 17585825 (+) True AMCG00017667
AMCG00017668 mRNA downstream 604333 17601792 ~ 17620033 (+) True AMCG00017668
AMCG00017673 mRNA downstream 679150 17676609 ~ 17692389 (+) True AMCG00017673
TU114914 other upstream 861902 16135025 ~ 16135316 (+) True G92130
TU114906 other upstream 1129584 15867031 ~ 15867634 (+) True G92123
TU114828 other upstream 1881187 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 1912940 15077325 ~ 15084278 (+) True G92046
TU114568 other upstream 2958155 14036876 ~ 14039063 (+) False AMCG00017620
TU115097 other downstream 604076 17601535 ~ 17606208 (+) False AMCG00017668
TU115411 other downstream 2075779 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 2404627 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 2423851 19421310 ~ 19423679 (+) False AMCG00017710
TU115510 other downstream 2446713 19444172 ~ 19528293 (+) True AMCG00017712

Expression Profile