RNA id: TU115216


Basic Information

Item Value
RNA id TU115216
length 528
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G92375
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17853927 ~ 17855416 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaataactttattaaagctgggaaatacaaaataaattattgtgaAATTATGCAATCTAAACCTTAAAAGTGTCGATAATAAATGATCTTTTCAGTGTAAGTCTCCCTCTTCATTGAGCAGGTTTTACATAAAGTGGATGTGAAGGAGTCCTTGAGGGTGGAGGGGAAGATAAAAAAGAGCCGCATCTTTCAGATTGCCTTCCACTTCCTGCCGCCAGAGCACTACCAGCAGGACAAGCTCCTGTCCCCAGAGAAAATCTTGCATTACATGGAGACCAGATTCTTCAGGCTCCTACTGGAAGCCATAAGAAAGCGGAGCTCGAAGCTGGCATCGCTGAGCTCAGTGGACTCGTGCAAGGCAACAAAGAGGGACTTGAACCAGGACTCTGGGGAATCCCAGGGCGGACAGGTATGGCTCCTATTTCAGCTGCTTTTTATAGAAGGGTACAATCTGATAATTAAATCACTGCTTGTTTCCTCTAGGTGTTTAAAGGGTAGAGGTTGAGTATTTTCAATAGAtgcttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115166 lncRNA downstream 64193 17781648 ~ 17789734 (-) True AMCG00017675
TU115135 lncRNA downstream 139745 17713903 ~ 17714182 (-) True G92313
TU115017 lncRNA downstream 458878 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 459206 17388627 ~ 17394721 (-) False AMCG00017663
TU114993 lncRNA downstream 601297 17252430 ~ 17252630 (-) True G92200
TU115229 lncRNA upstream 34926 17890342 ~ 17891070 (-) True G92386
TU115247 lncRNA upstream 249573 18104989 ~ 18105268 (-) True G92401
TU115281 lncRNA upstream 532389 18387805 ~ 18452812 (-) True G92428
TU115287 lncRNA upstream 604153 18459569 ~ 18459816 (-) True G92434
TU115288 lncRNA upstream 605952 18461368 ~ 18461702 (-) True G92435
AMCG00017680 mRNA downstream 20110 17825058 ~ 17833817 (-) True AMCG00017680
AMCG00017675 mRNA downstream 64178 17786934 ~ 17789749 (-) False AMCG00017675
AMCG00017676 mRNA downstream 119348 17721101 ~ 17734579 (-) True AMCG00017676
AMCG00017677 mRNA downstream 156487 17683162 ~ 17697440 (-) True AMCG00017677
AMCG00017669 mRNA downstream 189142 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017684 mRNA upstream 73017 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017688 mRNA upstream 318735 18174151 ~ 18177011 (-) True AMCG00017688
AMCG00017686 mRNA upstream 326149 18181565 ~ 18189353 (-) True AMCG00017686
AMCG00017687 mRNA upstream 376992 18232408 ~ 18268748 (-) True AMCG00017687
AMCG00017694 mRNA upstream 642713 18498129 ~ 18501874 (-) True AMCG00017694
TU115048 other downstream 379588 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 1823022 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1823022 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 1986280 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3374140 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 607368 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1557571 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1562785 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5462710 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5462710 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile