RNA id: TU115229


Basic Information

Item Value
RNA id TU115229
length 691
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G92386
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 17890342 ~ 17891070 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCttatgatcattgaaactccacgaggtgagatcttgcatggagcccccgACCGGGGGAggctgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacagtgctcctaatctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaattttttaacttttttgaaatgcgtttttctggatttttttgttcttattctgtctctcactgttaaaatacacctaccatgaaaatgatagactgatcatttctttgccAGTGGGCAAACgtgcaaaatcagcaggggatcaaatagttttttccctcactgtaagttgACTTTACTTGAAAAATCATGCAAACTCATTGCCTTGAAACAATCAAGTGAAGGAACTTTGTAGGCTCAAGGTAATGTTACTTCAGATTATGAGTTTAAATACCTTTCctattttgaatacattacaCTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115216 lncRNA downstream 34926 17853927 ~ 17855416 (-) True G92375
TU115166 lncRNA downstream 100608 17781648 ~ 17789734 (-) True AMCG00017675
TU115135 lncRNA downstream 176160 17713903 ~ 17714182 (-) True G92313
TU115017 lncRNA downstream 495293 17388627 ~ 17395049 (-) False AMCG00017663
TU115016 lncRNA downstream 495621 17388627 ~ 17394721 (-) False AMCG00017663
TU115247 lncRNA upstream 213919 18104989 ~ 18105268 (-) True G92401
TU115281 lncRNA upstream 496735 18387805 ~ 18452812 (-) True G92428
TU115287 lncRNA upstream 568499 18459569 ~ 18459816 (-) True G92434
TU115288 lncRNA upstream 570298 18461368 ~ 18461702 (-) True G92435
TU115293 lncRNA upstream 590701 18481771 ~ 18482074 (-) True G92440
AMCG00017680 mRNA downstream 56525 17825058 ~ 17833817 (-) True AMCG00017680
AMCG00017675 mRNA downstream 100593 17786934 ~ 17789749 (-) False AMCG00017675
AMCG00017676 mRNA downstream 155763 17721101 ~ 17734579 (-) True AMCG00017676
AMCG00017677 mRNA downstream 192902 17683162 ~ 17697440 (-) True AMCG00017677
AMCG00017669 mRNA downstream 225557 17620902 ~ 17664785 (-) True AMCG00017669
AMCG00017684 mRNA upstream 37363 17928433 ~ 17942165 (-) True AMCG00017684
AMCG00017688 mRNA upstream 283081 18174151 ~ 18177011 (-) True AMCG00017688
AMCG00017686 mRNA upstream 290495 18181565 ~ 18189353 (-) True AMCG00017686
AMCG00017687 mRNA upstream 341338 18232408 ~ 18268748 (-) True AMCG00017687
AMCG00017694 mRNA upstream 607059 18498129 ~ 18501874 (-) True AMCG00017694
TU115048 other downstream 416003 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 1859437 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 1859437 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 2022695 15866947 ~ 15867647 (-) True G92124
TU114641 other downstream 3410555 14433158 ~ 14479787 (-) True AMCG00017631
TU115289 other upstream 571714 18462784 ~ 18463176 (-) True G92436
TU115494 other upstream 1521917 19412987 ~ 19419356 (-) False G92591
TU115492 other upstream 1527131 19418201 ~ 19419356 (-) True G92591
TU116215 other upstream 5427056 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 5427056 23318126 ~ 23321954 (-) False AMCG00017780

Expression Profile