RNA id: TU115305


Basic Information

Item Value
RNA id TU115305
length 3436
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G92449
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18702776 ~ 18706251 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATTGCAAAGCAAAGATCCGTTTTATTGATTCCAAGAAGTCAATTCCCACAGGTGTTGCTGATGGGATCAATCCCTGGAAAACTGATTATACACAAAGTCCCATTCCACAGCTCTGGTGCTCACAAGTCTCTTGAAGCACAGTATAACATTATGGCAAGAATGACCAGACAGGTGGGCCATGACTGTACTCCAaacccatttatttttcagtgtaaagaaaaaaacacaaaagaggCAGCTTATGAGATGAGGAAGTTAACAAGACACCTGTTTCAAACGTCTGATGTGTAAGATCTGAAGGCAGCTAAATCTGTGTTATTACAAGTATCATTATGATCGCCTCAAAGGCACTTTATATTAAAGTGTGGACAGTCCCTTAGCAGTTCCTGGGTGGGGACTGCAAACTGGAGGTGAAGGGAAATAGAGATAACACTGCAAGGACCAGCAGCAACACAGAATAACTCCTTCAGAATAACTGGGAACCACTATTAATGAAGCTATCATCCCATTGTGTGCTCATCAACACAAAAAGGACAGGGGAAAACTAACAATTTAACAGCATATTTCCTGGAAATCATTAATAGGAAGCACATGACTACTAGGGATGGGCAATTGTGATATTGTCTCTCATCGGTTATTGGCTATAAATTACCAGCATAACCATGAATATTATCTGAAGAAATTCAATCTGAATCAGTCACACAGTGCTTCTACAAGTCACTTTGAACAAGTCTTAGACTGAAATCCAATGAATGGCAAATCCGAAAGTCCATGTTTTCTACAGTAATTTTATGGTATCTGAGCAGCTagccttttattttcataagtGTGGTAAAGCTTTCTTGTCAGAAAACCAGTGCTGCTATGGTGATGGTGATGCTATGATCAAAAGGAAACCAGAATAAGTCAACTGCAGCAAAGTTTAAAATGGCAGCACAGATATCAcccacaaaaaaaatgaaaaaccttgGGTTAAGTGAATCACAAATTTAAATCTTTATTGAGGAAAGCAGTTTACTCTTAGTTTTTGGGGTTACTGCTTTAGTCCAAATTTACTGAAATGCAATGTGGGCTCATGCATTTtttggaaggaaaataaaaacccatTCAGCGTCACTTTCCAATGTATGAAAAGACTAAATatggaattaataaatacatggaaattgcacatgatttgacattttttataGGACTTGCAGAGGAGCAGCTTATTTTTCAAAgagattaataaatatttttttaatctggaaaatgggaaaaaataaataaaaatgtactgtgACTTTCCATTAAGGCATCTGCAAATTAGCCTTTTAATATTGAGAAGTCTCCGATTAACTGCTAATTGCTAACAACTGAATTGTAATGGCATGCGTTTCTTTTTCAGGCGCCGGGGATTGATTTTGTTGCTGCATGATCTGTAACTGGTCCTAAGCTAGGGGACCAAACCAAAGTGTCTTATAGTGACTTCAATAGACCAATTTGCTTAAATTagtacacatttacaaatgtcCCAGAGTTCTAGCCATTGCCCATTTGAACCTTCTAACAAAATCTGCAGGATTTTTGCTCTCCAGGTCAAGGCTTTCAAACACCTGTCACAAACTCTTCAATAGCTTGTGACACTGCTTAACAAAATAATGGTAAATGACATTTCAACTTTATGGCTCTGCTCATCTGTAGCTGGCAAGTACaagaacatacaaataaaaaaaacaatctcatCCCTCTCTCAAACGGGAGATTTCAGTTCTGCTGGTTTGTGCTTGCTACTCAAGTGATTTCTGGGTGCAGTCTAACAACTTTAACAAACTCAATCAGAAATGGAAATGCTGGTGCCTCGGTCAACATGTAATAGCATTTATAATTTCACTGTttttgatctgtgctgtatttttattgaagaaattaaaatggttgattttgctttttttttggttgcctCTGCGGTATTAGATTTTGCAGGACTGTATGCATATGTGGAATCTGATTTCTTTAGGCAGTGATTTGTGGCAATCTCTGTGCACAGAGGCTTGCTTAGAGAGCTGATATCGCTACCTTATAACATCGCGGCTCATTCACAGAGACTCCAAAGACTCGTGAACAGAATCAacgccattttgtttttccacttattCAACCAGTTTCAGGCATTCTCCATTTACCATCACAACAGCTGCTGTTGTTTAGTGAACTCCTGACCTGCTTTAATGCAGAGCTACTGCTACACACCCTTAGTGACTGCAATGGCAGTCTCGTGGGTTATGCATGATAATTATGATTATCGATCCATTTTCAGCACCATAAAATAATAGTTACAAAACATGACAGATAATATCACAATAATCGATTGTCCTATCCCTAAGGAACACTGCTTTgctgtgttattttaaagaggCTACTGCACCTTTAACTTAAATCAGTTCCCATCTGTAATGTTTAACAACCACCCACTTGATGAGAAGGAAGTTACAGCACAGCTTGAAACACCTGTTGGCCAATCAAACACATTATGACATGACTGGTTTAGAACATGAAGAGTCTATTACTATTTGGCAAAAAATATCAACCAAATCATTTGACCTTTTCCTTATATAGAACACTGAATTTTTCCAAACAAGCAGCTTTTATACCCACGCTGATATCATGTAAGACAAaatctgtgtattttcattGAATGCccttttaaatctattttatataacaagcttttttttttttcatcttttcctGAACTAAGCTGTAATACGCAAAGTATCTCCTAAGAAGATTTCatagttattttaaacttttttttgtttttacattttattttttaatacaaaatatcttTCCTCTATCTTAATTGTGCATTCACTGAATGACAAATTTACAGGTGACTACCAGACCTTCTTCTGTACAACTGTCACCTTCTAAAGCAGGCCAAAAAAACagccaaatacaaaaaaaaaaaaaatcttaagtcactttgtttttgtgggAGGCTAGGGAAGGATGGGTGaatttttctctttttaggGGAgttaaatgcaatgcaaaaaaaaaaaaaaaaaaaggcctaccacaaagaaattataaaaaaggACAGGATCTAGAACAGTCTTGGCTGATCAATTGTTCTCGATCTGTTCTAGATCCAAGTCTCCGCAGTCCAGAGGGAAGACGCCCTCCTCGGCGCTCTCACAATCGCTGGTGTCCTCGTCGCTCTCGCTCACAGCAGCCGTGCCCCCGAAGGAGCGTGCGTGGCAGGCAGGGCCGTGGCGTGCGGCTATCCTGTGGAGTTGACTCAGGCCCTCCTTCAGCGGGCTGGAGCCGGGCGTGATGATGGTCATAAGAAGGTCGTTGGAGTCACAGGGCGACGACACGATGGTCTTCATGTGGGGATCATCGTCTTCCTCGTAGTCCAGAGAGCAAAGGCTTTTGGAGTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115260 lncRNA upstream 460939 18231361 ~ 18241837 (+) True G92412
TU115246 lncRNA upstream 597508 18104989 ~ 18105268 (+) True G92400
TU115144 lncRNA upstream 968190 17734020 ~ 17734586 (+) True G92322
TU115142 lncRNA upstream 971524 17730880 ~ 17731252 (+) True G92320
TU115140 lncRNA upstream 973701 17728869 ~ 17729075 (+) True G92318
TU115323 lncRNA downstream 56140 18762391 ~ 18763664 (+) True G92463
TU115338 lncRNA downstream 98061 18804312 ~ 18805055 (+) True G92475
TU115368 lncRNA downstream 151695 18857946 ~ 18858230 (+) True G92502
TU115409 lncRNA downstream 295489 19001740 ~ 19004537 (+) True G92536
TU115427 lncRNA downstream 484944 19191195 ~ 19199246 (+) True G92552
AMCG00017693 mRNA upstream 211226 18483471 ~ 18491550 (+) True AMCG00017693
AMCG00017692 mRNA upstream 238829 18460767 ~ 18463947 (+) True AMCG00017692
AMCG00017691 mRNA upstream 249972 18444938 ~ 18452804 (+) True AMCG00017691
AMCG00017690 mRNA upstream 280365 18417215 ~ 18422411 (+) True AMCG00017690
AMCG00017685 mRNA upstream 636071 18062698 ~ 18066705 (+) True AMCG00017685
AMCG00017706 mRNA downstream 190235 18896486 ~ 18907295 (+) True AMCG00017706
AMCG00017705 mRNA downstream 263345 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017708 mRNA downstream 646637 19352888 ~ 19363242 (+) True AMCG00017708
AMCG00017710 mRNA downstream 695856 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017712 mRNA downstream 738277 19444528 ~ 19445098 (+) False AMCG00017712
TU115097 other upstream 1096568 17601535 ~ 17606208 (+) False AMCG00017668
TU114914 other upstream 2567460 16135025 ~ 16135316 (+) True G92130
TU114906 other upstream 2835142 15867031 ~ 15867634 (+) True G92123
TU114828 other upstream 3586745 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 3618498 15077325 ~ 15084278 (+) True G92046
TU115411 other downstream 366987 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 695835 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 715059 19421310 ~ 19423679 (+) False AMCG00017710
TU115510 other downstream 737921 19444172 ~ 19528293 (+) True AMCG00017712
TU115788 other downstream 2093344 20799595 ~ 20815546 (+) False AMCG00017747

Expression Profile