RNA id: TU115368


Basic Information

Item Value
RNA id TU115368
length 285
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G92502
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 18857946 ~ 18858230 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGACTGCCCTGGTCTCTGTTGTCAGTCATGCTGGCGACTCTGGGCAGGGGGTCTGCTGGGCCGCAGTCTTCCGTCTCTTTGCTATAGCCCCTCTTGGTGATGGGGGGCGTGTTCCGGTCACTCCTGACCAGGCCTCTCTTATCCTGAGcatttctcctctcaaagcgaTCACGCTGGCTACATTCACGGCGCTGCAGACATTCGAAGCGGTAACGACGCTCACTGCGCTCCAGGAATTCGAAGTGGTTATGGCGCTCACTGCGCCCCCGGCAGGAGCTACTCCT

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115338 lncRNA upstream 52891 18804312 ~ 18805055 (+) True G92475
TU115323 lncRNA upstream 94282 18762391 ~ 18763664 (+) True G92463
TU115305 lncRNA upstream 151695 18702776 ~ 18706251 (+) True G92449
TU115260 lncRNA upstream 616109 18231361 ~ 18241837 (+) True G92412
TU115246 lncRNA upstream 752678 18104989 ~ 18105268 (+) True G92400
TU115409 lncRNA downstream 143510 19001740 ~ 19004537 (+) True G92536
TU115427 lncRNA downstream 332965 19191195 ~ 19199246 (+) True G92552
TU115447 lncRNA downstream 489912 19348142 ~ 19383974 (+) True G92566
TU115466 lncRNA downstream 537798 19396028 ~ 19413956 (+) False AMCG00017710
TU115468 lncRNA downstream 537798 19396028 ~ 19419001 (+) False AMCG00017710
AMCG00017693 mRNA upstream 366396 18483471 ~ 18491550 (+) True AMCG00017693
AMCG00017692 mRNA upstream 393999 18460767 ~ 18463947 (+) True AMCG00017692
AMCG00017691 mRNA upstream 405142 18444938 ~ 18452804 (+) True AMCG00017691
AMCG00017690 mRNA upstream 435535 18417215 ~ 18422411 (+) True AMCG00017690
AMCG00017685 mRNA upstream 791241 18062698 ~ 18066705 (+) True AMCG00017685
AMCG00017706 mRNA downstream 38256 18896486 ~ 18907295 (+) True AMCG00017706
AMCG00017705 mRNA downstream 111366 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017708 mRNA downstream 494658 19352888 ~ 19363242 (+) True AMCG00017708
AMCG00017710 mRNA downstream 543877 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017712 mRNA downstream 586298 19444528 ~ 19445098 (+) False AMCG00017712
TU115097 other upstream 1251738 17601535 ~ 17606208 (+) False AMCG00017668
TU114914 other upstream 2722630 16135025 ~ 16135316 (+) True G92130
TU114906 other upstream 2990312 15867031 ~ 15867634 (+) True G92123
TU114828 other upstream 3741915 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 3773668 15077325 ~ 15084278 (+) True G92046
TU115411 other downstream 215008 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 543856 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 563080 19421310 ~ 19423679 (+) False AMCG00017710
TU115510 other downstream 585942 19444172 ~ 19528293 (+) True AMCG00017712
TU115788 other downstream 1941365 20799595 ~ 20815546 (+) False AMCG00017747

Expression Profile