RNA id: TU115409


Basic Information

Item Value
RNA id TU115409
length 2798
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G92536
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19001740 ~ 19004537 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgggcaaacatacaaaatcagcaggggatcaaatacttttttccccctcactgtatatatgaaatattataCAACTTTCTTTTCACTTGTGCAGCCTGATTAATTGATCTGGTCTGTGTTCTGAATGAACTAGATGCTATAACATTCAggatatgatttgtttttgctatCAATTGAAATGCTAATGTGTACAGACATGTACATTCTATTTCCTATCAGATTCAATGCCTTATGCTATTGACTGATCCCTTAATATTCAGATAGCCGAATTTTAAGGGACACTGTTGGCTGAATTGATGAGACCTATGGTTTTGTAGAATGATCCTGAGTTTATTAGGCTCTCAAAAAGACGCATTTCATTATCACTGTTATCATTGTTAACTGGAAGTTAAATGTgctgtggatttaaaaaaaaagtactctTATTATAAAGACTTTCTGTCCTTACAAGGCAATGCTTGTTTGGACAGCAGATCTTTTTTCTCCTCATATTATTCCCTCCCATTTTACATCTAGTGCCTGTCAGTTATTTGCTAgtttactgaaaatgttttacactCCGACTCTACCTATGTCAGGTTGGTGTTAAAATCATCATAAAATGCAACAAAGCAACCCTTATATTTTTAGGAGAGTTGGCTTATTTGCAAGattgaggggtgggggtgggggtgctgttCTTATAGACAGCTTGAactttaaaagtgtattttgtttaagggAAATTAAATGTGCAGACTGTGAACTGAAACTGTATTGGAGAACATGTCTTGTTGGAaccaaaaagagaaaacagagaaaacaaaaagattgtaaaagtaaacattttaaaggtccaggtttcattattttatgtttatataatatcCGTAAAGCCACTAGAACCTTTTATCAAAATTAAAAGTGCTTTCTAATGCTTTCCCCTTATAATAGCCATTAGTCTACCCTCAGTTACTTATGCCTTTTCACTCTGGACTTTTCAGTATGGCAAGATAATGCTTTATAATCACTTGTCTGTTCAGTGTTGTTAATAGCAACCATCCAGACTTGGTATACATCTAGATGTAATCTGCaccagtaaaatgtatataaatgtgcaaTGCATTTCTTCAAAAGCCTGTTTGTgaataatatgaaaaacaggTCCGTGGTTAAACGAAAGAGTAGTTTGAAGATGGATATTATACCCTATCAAGGTCCAGTGAGTGATgtgtatgatttttattttatttttatttcttttaagttTACTGGTTCTGAATAATGCTAAGCTCTTGTCGTACCACTGTTGTAGAGGAAATACAACgtcatattattttctgtgtactgACTGCAATGCAGAGTAGCTTTCTGAAATGATAAAGTGGGAAGTGAAGCAGGACAAGGTCTGAAGAAATGTTTTGCTTAGCCGGTAAAACAGCAGTTAATGAAGTCTGGTATTTTATTAGTTGAACTGGACCTCTGATTTTCAGGTATATTGTTCAGTTTCTGGTATGACAACAGCACAATGACATTAGGATCACGGGATCAGAAATATTCTGTCTTCGCCAGCTGTGGTGAAAGAGGGACAGTTTTACAAAGGATGCGTTTGAAATTCCACATCAGTTCTGTATTTGGAAGCTCTGCAGAGAAAGGCACTAAAGAGGTGCTTTTAATATGAACTATACATAATTCTACCAAAAACATCTTGAAAGACAAAACATGATTCTTGAAAGTGACCCTGAGGTGACAGCTCTCTGCAAAGCCAACCTGTATACAGCTGTTcgaatttgcttttaaatgttaaaagctaCAGTAACCAGTCTTCACACTGGCACATCCCTAGGAGCCATAATTGCAGTCATCAATTTTGCAGcccaaaaagaaaatcacaggtTTTCGCCGCTGCTTTTCTCACGCGGCAGCTGAGCCATTTCTGTATGAGGTCAATGCTCTGTAATAGTTAAAGGAGCTTACAGTTTTGGGTttaaatttagttattttacagatttatcCCGGCTAACTGCTAGATCATTACTATAACCATAGACATGATAACCTGGGGTCCTTGCACAAAGAGCATTCAAAACGAAATACAATTCCTTAACCCTTGTCCTTTCCCAGCATTATACTGTATGTGgtcttcttttattttgcttaattttgttgttgtggaaTGTGATTGTTTGCATTATTGTTCTCTGTGCGCAACATACACTTTAATGTGTGCTCCTTTTGAGAACAAGGtcttaaaagaagaaaaagaaaaacaaatgttaatgtGGCAATGTTGTCCAGtatatattaaagaaagaaatgtgcaaTATACGCTTCTCAGATGGTTCAAAGTTGCGACCTAAAACTCAAGGTTACTCTACTTTCCTGTCATTTTCTCAGGTTACAGATTGCCTTCTCAGTCTCCTACCCAAACGGTTACTGGGAACCTCAGATCACACTAATGCAGACTTAAATGAAATGGTGGATTTTTGtggtcttttattattataattttattttttatttttttgctttcttcttgTTCTCAATGTTTTGTGATACATGTGTTGAGATTCCATTCAAAACCTGGGCACTTAGCTTGGTgtctttctttgtttattattattttttattttattttcattatttattgcacatgtaataaaacaacttttgttttcattgccaTGTAAAAGGAGATGGAGTCAAAGCTCGGTCAAGTTAAAGAACTGGGCTTGGTTTTTCTGCCACATATTATTAAGGAAGCATTTTGTTGAAAAATTCAGAGTgtgtatttcattaataaatgcCTTTAAGTAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115368 lncRNA upstream 143510 18857946 ~ 18858230 (+) True G92502
TU115338 lncRNA upstream 196685 18804312 ~ 18805055 (+) True G92475
TU115323 lncRNA upstream 238076 18762391 ~ 18763664 (+) True G92463
TU115305 lncRNA upstream 295489 18702776 ~ 18706251 (+) True G92449
TU115260 lncRNA upstream 759903 18231361 ~ 18241837 (+) True G92412
TU115427 lncRNA downstream 186658 19191195 ~ 19199246 (+) True G92552
TU115447 lncRNA downstream 343605 19348142 ~ 19383974 (+) True G92566
TU115466 lncRNA downstream 391491 19396028 ~ 19413956 (+) False AMCG00017710
TU115468 lncRNA downstream 391491 19396028 ~ 19419001 (+) False AMCG00017710
TU115499 lncRNA downstream 420147 19424684 ~ 19428648 (+) True G92596
AMCG00017705 mRNA upstream 4808 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017706 mRNA upstream 94445 18896486 ~ 18907295 (+) True AMCG00017706
AMCG00017693 mRNA upstream 510190 18483471 ~ 18491550 (+) True AMCG00017693
AMCG00017692 mRNA upstream 537793 18460767 ~ 18463947 (+) True AMCG00017692
AMCG00017691 mRNA upstream 548936 18444938 ~ 18452804 (+) True AMCG00017691
AMCG00017708 mRNA downstream 348351 19352888 ~ 19363242 (+) True AMCG00017708
AMCG00017710 mRNA downstream 397570 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017712 mRNA downstream 439991 19444528 ~ 19445098 (+) False AMCG00017712
AMCG00017714 mRNA downstream 596932 19601469 ~ 19609786 (+) True AMCG00017714
AMCG00017713 mRNA downstream 613503 19618040 ~ 19633716 (+) True AMCG00017713
TU115097 other upstream 1395532 17601535 ~ 17606208 (+) False AMCG00017668
TU114914 other upstream 2866424 16135025 ~ 16135316 (+) True G92130
TU114906 other upstream 3134106 15867031 ~ 15867634 (+) True G92123
TU114828 other upstream 3885709 15112610 ~ 15116031 (+) False AMCG00017650
TU114814 other upstream 3917462 15077325 ~ 15084278 (+) True G92046
TU115411 other downstream 68701 19073238 ~ 19073662 (+) True G92538
TU115469 other downstream 397549 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 416773 19421310 ~ 19423679 (+) False AMCG00017710
TU115510 other downstream 439635 19444172 ~ 19528293 (+) True AMCG00017712
TU115788 other downstream 1795058 20799595 ~ 20815546 (+) False AMCG00017747

Expression Profile