RNA id: TU115447


Basic Information

Item Value
RNA id TU115447
length 334
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G92566
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19348142 ~ 19383974 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcttcttgtgCTGTCAGACTGTTACCCAGCGAAGACGGGACGTCCCCGCTATCCAGGATGCTGAACCCCTCGTCGTTCTCTATCCCCGCTATCTCGCTCTCTTGCTGGGCCAAGAAAGCAGCCGCGGGGTCCTCCTCCGCTGCAACCCCGTTCCCGGCAGGATTTTGCGGGGCGTTAAGTAAATCGAAATCATCCATATCTACCTACAAAGAGAGAAAGACCCCTGCCGAGGGACAAAAAAgggtgaaaataaatgaaaatggacTACAATTACAGTCAGTGAGAGAGGTCAGACCTAGATTAAACAGAGGGCGTTGAAAATGGCTTCAGCGT

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115427 lncRNA upstream 148896 19191195 ~ 19199246 (+) True G92552
TU115409 lncRNA upstream 343605 19001740 ~ 19004537 (+) True G92536
TU115368 lncRNA upstream 489912 18857946 ~ 18858230 (+) True G92502
TU115338 lncRNA upstream 543087 18804312 ~ 18805055 (+) True G92475
TU115323 lncRNA upstream 584478 18762391 ~ 18763664 (+) True G92463
TU115466 lncRNA downstream 12054 19396028 ~ 19413956 (+) False AMCG00017710
TU115468 lncRNA downstream 12054 19396028 ~ 19419001 (+) False AMCG00017710
TU115499 lncRNA downstream 40710 19424684 ~ 19428648 (+) True G92596
TU115512 lncRNA downstream 227074 19611048 ~ 19611287 (+) True G92607
TU115529 lncRNA downstream 269231 19653205 ~ 19654620 (+) True G92620
AMCG00017705 mRNA upstream 351210 18969596 ~ 18996932 (+) True AMCG00017705
AMCG00017706 mRNA upstream 440847 18896486 ~ 18907295 (+) True AMCG00017706
AMCG00017693 mRNA upstream 856592 18483471 ~ 18491550 (+) True AMCG00017693
AMCG00017692 mRNA upstream 884195 18460767 ~ 18463947 (+) True AMCG00017692
AMCG00017691 mRNA upstream 895338 18444938 ~ 18452804 (+) True AMCG00017691
AMCG00017710 mRNA downstream 18133 19402107 ~ 19433103 (+) True AMCG00017710
AMCG00017712 mRNA downstream 60554 19444528 ~ 19445098 (+) False AMCG00017712
AMCG00017714 mRNA downstream 217495 19601469 ~ 19609786 (+) True AMCG00017714
AMCG00017713 mRNA downstream 234066 19618040 ~ 19633716 (+) True AMCG00017713
AMCG00017717 mRNA downstream 299819 19683793 ~ 19694234 (+) True AMCG00017717
TU115411 other upstream 274480 19073238 ~ 19073662 (+) True G92538
TU115097 other upstream 1741934 17601535 ~ 17606208 (+) False AMCG00017668
TU114914 other upstream 3212826 16135025 ~ 16135316 (+) True G92130
TU114906 other upstream 3480508 15867031 ~ 15867634 (+) True G92123
TU114828 other upstream 4232111 15112610 ~ 15116031 (+) False AMCG00017650
TU115469 other downstream 18112 19402086 ~ 19411990 (+) False AMCG00017710
TU115496 other downstream 37336 19421310 ~ 19423679 (+) False AMCG00017710
TU115510 other downstream 60198 19444172 ~ 19528293 (+) True AMCG00017712
TU115788 other downstream 1415621 20799595 ~ 20815546 (+) False AMCG00017747
TU115792 other downstream 1436537 20820511 ~ 20821947 (+) False AMCG00017747

Expression Profile