RNA id: TU115494


Basic Information

Item Value
RNA id TU115494
length 477
RNA type TUCP
GC content 0.52
exon number 3
gene id G92591
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19412987 ~ 19419356 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNCCGCACAGTGGAGAGGGCCCTGGGGTCTGGCATCAAGAGGATGCTGCCCTGTGAAAAGCCTTGTCATGACAAGCTGGGCAAGTCTGTAGTGGCCAAGAAGGCCATTCCCAAGGGCACAGAACTGAGCCTGGACATGCTGGCAGTGAAGCTGGAAGATCTCCTCTGGAGCCACGCCCCTGGGTTCAGCCACCTTCACTGCCAGCATGTCCAGGCTCAGCGCCGTACCCTTTGCAATCGCCTTCTTGGCCACCACAGACTTGCCCAGCTGGAAAGAAGAAAGACGATGTGTCAAACATTGCACGAGTTGGAAACCATCAATTAATCAACTAATCAATTAATCCAATCCATTTGCAAAGTTGCCACAGAGTGcttaaaacagattaaaacagcCTATCTTACCTTGCTATGACAGGATGTCTCACAGGGCAGCATCCTCTTGATGCCAGACCCCAGGGCCCTCTCCACTGTGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115414 lncRNA downstream 286638 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 339122 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 562359 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 649326 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 919757 18492538 ~ 18493230 (-) True G92444
TU115513 lncRNA upstream 193349 19612705 ~ 19613182 (-) True G92608
TU115514 lncRNA upstream 193885 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 446616 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 448062 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 486636 19905992 ~ 19920152 (-) True G92682
AMCG00017709 mRNA downstream 28904 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017707 mRNA downstream 210162 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017701 mRNA downstream 488551 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017700 mRNA downstream 501116 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017702 mRNA downstream 516480 18890221 ~ 18896507 (-) True AMCG00017702
AMCG00017711 mRNA upstream 6683 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017715 mRNA upstream 232160 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017716 mRNA upstream 237577 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017720 mRNA upstream 277197 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017728 mRNA upstream 449643 19868999 ~ 19869457 (-) True AMCG00017728
TU115289 other downstream 949811 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 1938648 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 3382082 16030402 ~ 16030905 (-) True G92129
TU114912 other downstream 3382082 16030456 ~ 16030905 (-) False G92129
TU114907 other downstream 3545340 15866947 ~ 15867647 (-) True G92124
TU116215 other upstream 3898770 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3898770 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3898770 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6593305 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6593305 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile