RNA id: TU115513


Basic Information

Item Value
RNA id TU115513
length 478
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G92608
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19612705 ~ 19613182 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacatcattcatgcttttttatttcattggcACAATGTTTTTAGTCTTTCAAGATGGTATTTTGGCATGAATGGATGATGAGCTTGAGATGAACACAGAAATACATGTCTGTTATCTCCTGTCACAGCGACGTCAGGCACTCCAATGTTTTCCTGCTTTCACTACCATTATTACTTTTAGTCCATTGTGGTCACGTTTTCCTATCTTGTCCTTGGCTTGTGTCCATGCAAGCAAAACATCAAGCTTCATCCCAGCGTTTTGCAAACCCTGTTGTCCCTTTATCTTAACTCCATAGTCTTAATGCTGTTGTGAGAGTACACACGTTGTTACTGCAGATGAGTAGAAGCAGCTACATGTAAACATTTCATGGGCgttctttaatatatatttatatatttatattttcaatttaaaaaactataaatacaaaaaaatgaagcatTATTTACAAACTCCATGCTTTTGGGTTAGATTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115414 lncRNA downstream 486356 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 538840 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 762077 18850062 ~ 18850628 (-) True G92499
TU115324 lncRNA downstream 849044 18763097 ~ 18763661 (-) True G92464
TU115297 lncRNA downstream 1119475 18492538 ~ 18493230 (-) True G92444
TU115514 lncRNA upstream 59 19613241 ~ 19617787 (-) True G92609
TU115574 lncRNA upstream 252790 19865972 ~ 19866417 (-) True G92657
TU115579 lncRNA upstream 254236 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 292810 19905992 ~ 19920152 (-) True G92682
TU115645 lncRNA upstream 688818 20302000 ~ 20358625 (-) False AMCG00017725
AMCG00017711 mRNA downstream 179016 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017709 mRNA downstream 228622 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017707 mRNA downstream 409880 19196121 ~ 19202825 (-) True AMCG00017707
AMCG00017701 mRNA downstream 688269 18913165 ~ 18924436 (-) True AMCG00017701
AMCG00017700 mRNA downstream 700834 18907263 ~ 18911871 (-) True AMCG00017700
AMCG00017715 mRNA upstream 38334 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017716 mRNA upstream 43751 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017720 mRNA upstream 83371 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017728 mRNA upstream 255817 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017724 mRNA upstream 275754 19888936 ~ 19890529 (-) True AMCG00017724
TU115494 other downstream 193349 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 193349 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1149529 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2138366 17468605 ~ 17474339 (-) False AMCG00017665
TU114913 other downstream 3581800 16030402 ~ 16030905 (-) True G92129
TU116215 other upstream 3704944 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3704944 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3704944 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6399479 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6399479 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile