RNA id: TU115574


Basic Information

Item Value
RNA id TU115574
length 446
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G92657
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 19865972 ~ 19866417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTTtgattagaccaattaaggagccaagagctggtcTGGAATGAAACCCAGCAGTCAGcgtggccccccaggactggagtctgacacccctggtctaggactactctacctaaaatagcATTGGGTAGTCCATGTTTAGTGCTAATTTGGGTCTATGAAAGGCCTTGGtgttggtttcacagacccagattagcactagtctccTAAATTGATTTGAAGTAAAATTGAGGTGTTTGTGTCCAGCTGTTAATGTTAAAGATGAATCTCCTTAGTGTAGATAtcgtcagtgtttttttttttaagaattgagGTACTTGTGTGAGGGATCTTGCTCTGTAATAAACTGTTAAACAAATCAaggtttgtaatgttttcaatcGACCTCAAGTTTAACAATGTTTTCCTAGGACCTGCATTCCCCTCCTAAAACTCTTAAGTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115514 lncRNA downstream 248185 19613241 ~ 19617787 (-) True G92609
TU115513 lncRNA downstream 252790 19612705 ~ 19613182 (-) True G92608
TU115414 lncRNA downstream 739623 19126060 ~ 19126349 (-) True G92541
TU115412 lncRNA downstream 792107 19073238 ~ 19073865 (-) True G92539
TU115365 lncRNA downstream 1015344 18850062 ~ 18850628 (-) True G92499
TU115579 lncRNA upstream 1001 19867418 ~ 19867636 (-) True G92660
TU115611 lncRNA upstream 39575 19905992 ~ 19920152 (-) True G92682
TU115645 lncRNA upstream 435583 20302000 ~ 20358625 (-) False AMCG00017725
TU115646 lncRNA upstream 435583 20302000 ~ 20317431 (-) True AMCG00017725
TU115649 lncRNA upstream 548889 20415306 ~ 20415612 (-) True G92714
AMCG00017720 mRNA downstream 55844 19696553 ~ 19810128 (-) True AMCG00017720
AMCG00017716 mRNA downstream 206444 19656933 ~ 19659528 (-) True AMCG00017716
AMCG00017715 mRNA downstream 211292 19651516 ~ 19654680 (-) True AMCG00017715
AMCG00017711 mRNA downstream 432283 19426039 ~ 19433689 (-) True AMCG00017711
AMCG00017709 mRNA downstream 481889 19367714 ~ 19384083 (-) True AMCG00017709
AMCG00017728 mRNA upstream 2582 19868999 ~ 19869457 (-) True AMCG00017728
AMCG00017724 mRNA upstream 22519 19888936 ~ 19890529 (-) True AMCG00017724
AMCG00017727 mRNA upstream 81775 19948192 ~ 19954812 (-) True AMCG00017727
AMCG00017726 mRNA upstream 107001 19973418 ~ 19986615 (-) True AMCG00017726
AMCG00017725 mRNA upstream 439909 20306326 ~ 20345619 (-) False AMCG00017725
TU115494 other downstream 446616 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 446616 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 1402796 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 2391633 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 3835067 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 3451709 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 3451709 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 3451709 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 6146244 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 6146244 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile