RNA id: TU115857


Basic Information

Item Value
RNA id TU115857
length 529
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G92892
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 21128471 ~ 21128999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aactgaaaAATGTAGGCGTGtggtaaaggacttaaggagataGCTTTGAAGCTCAGTGTTTTacgacaggcctgtgctcaccaaagtacgacagataacacGTCCATGCTGGAAGACCCCCCCACctgacaaatgggctgccatgccccgTCTCCAGAGAGACTAGCATcacattccaattgaagatttcttttgtgaaacagacattcaaggtactttatatattccatagaccagggcaacaaacccaaatacaaactacatgctactaacagaagtgttacccagcttcttcctcagtttgataacaaacaataaacggtgacttaaaactaaaacacagagcttcaaagctgtctccttaagtcctttagcacaagcctacatttctcagttaggaaggtatatgcatttcagtatatatttgccaaaataaggttgtatgatttacagaaCCACGGACAAAAATCCTTCAGCCCCCCCCACTAACACCACGGACCAGTCAGGGCGGGAAGGGGGTAGGGGcggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115794 lncRNA downstream 305511 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA downstream 306476 20820466 ~ 20821995 (-) True G92838
TU115778 lncRNA downstream 394049 20676659 ~ 20734422 (-) True G92823
TU115776 lncRNA downstream 452193 20672065 ~ 20676278 (-) True G92822
TU115751 lncRNA downstream 493591 20634672 ~ 20634880 (-) True G92800
TU115940 lncRNA upstream 844985 21973984 ~ 21974289 (-) True G92943
TU115945 lncRNA upstream 915981 22044980 ~ 22124742 (-) True G92947
TU115948 lncRNA upstream 963966 22092965 ~ 22093405 (-) True G92948
TU115953 lncRNA upstream 1023373 22152372 ~ 22152578 (-) True G92953
TU115955 lncRNA upstream 1091522 22220521 ~ 22220780 (-) True G92955
AMCG00017752 mRNA downstream 214515 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017751 mRNA downstream 354047 20748155 ~ 20774424 (-) True AMCG00017751
AMCG00017748 mRNA downstream 387076 20690221 ~ 20741395 (-) True AMCG00017748
AMCG00017749 mRNA downstream 460799 20653145 ~ 20667672 (-) True AMCG00017749
AMCG00017737 mRNA downstream 500488 20626084 ~ 20627983 (-) True AMCG00017737
AMCG00017753 mRNA upstream 358 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017759 mRNA upstream 167048 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017758 mRNA upstream 187468 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017757 mRNA upstream 270302 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017763 mRNA upstream 1180250 22309249 ~ 22366047 (-) True AMCG00017763
TU115494 other downstream 1709115 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 1709115 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 2665295 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 3654132 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 5097566 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 2189127 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 2189127 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 2189127 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 4883662 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 4883662 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile