RNA id: TU115948


Basic Information

Item Value
RNA id TU115948
length 411
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G92948
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22092965 ~ 22093405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cAGGGGGATGTTGcaggcgctgcaggatttcagtccttcatggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatctgattgattgattgcttctgtggacaggtgtcttttatacaggtaatgagctgagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115940 lncRNA downstream 118676 21973984 ~ 21974289 (-) True G92943
TU115857 lncRNA downstream 963966 21128471 ~ 21128999 (-) True G92892
TU115794 lncRNA downstream 1270005 20817675 ~ 20822960 (-) True G92836
TU115796 lncRNA downstream 1270970 20820466 ~ 20821995 (-) True G92838
TU115778 lncRNA downstream 1358543 20676659 ~ 20734422 (-) True G92823
TU115953 lncRNA upstream 58967 22152372 ~ 22152578 (-) True G92953
TU115955 lncRNA upstream 127116 22220521 ~ 22220780 (-) True G92955
TU115974 lncRNA upstream 179576 22272981 ~ 22274977 (-) True G92972
TU116050 lncRNA upstream 593019 22686424 ~ 22689677 (-) True G93024
TU116052 lncRNA upstream 597270 22690675 ~ 22691532 (-) True G93026
AMCG00017757 mRNA downstream 689705 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 723476 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 788842 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017753 mRNA downstream 956405 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017752 mRNA downstream 1179009 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017763 mRNA upstream 215844 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017776 mRNA upstream 1076168 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017777 mRNA upstream 1170629 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017782 mRNA upstream 1203283 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 1224688 23318093 ~ 23321930 (-) False AMCG00017780
TU115494 other downstream 2673609 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 2673609 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 3629789 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 4618626 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 6062060 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 1224721 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 1224721 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 1224721 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 3919256 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 3919256 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile