RNA id: TU115974


Basic Information

Item Value
RNA id TU115974
length 1930
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G92972
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22272981 ~ 22274977 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagaaactgaaaatgtacatttcaaattaagtgaTTTTGAAAAATCATAATTGGCTATTATTGGTTTTCctatattaagattttattacaaatatatattagcatccataaaaacaaataggaaaAGATTTAGATTTGCTTAAATTCAGGTCAATGGTTTGTAATATGAAACACAGGTCCGCTGAGCAGTAGCTTTTAAATCACATCATACAAGTATAAGACTTAAATTATATGAGTTTTCCATTTCCGAGTCACACGTGATAAAAATgcttcacaaaataattaattcatatattatttattgtttaaaacaaaattattgttaataaacaaaaaggttttacattgaaaatcaagtaataaattaatgacaaaAGGATTACAAAGGAATAACACAGCATTTTCAAGTCTCAACCATGTACAAtataaaatgtaagatATTCATCTGTTATTCCggaagaaagaaacaagaaaattactttgaaatatttatgttttcttttttgtatctTTGTCAAGACGTCTCATATAAATAGCTCTGTTCATGTGTAATAGCAAAAATACTTCAATATTATTGGGAGACGTTTTAAACAGTAAATTCCTGAATCATGTCCATTTTACATTCTACTATTTATGAATTACTTAAAGTTGAGTAAACTAACCATTTCAGCTCTCTGTTACAGTTGTCCATACAAAACCTCtttattgaaaaggaaaaatagcTCTCATTTACCTCTAGGAATCATGCAGTAAGTCACAGTTCTCTGTGCACAGTAAATATGATCATGTAAACTTGATCATGTAATCATGTATATCCATTTGTTACATTAAAACCAATTCCCATTACAAAAGATTTGacttattttaacaacaatgttgtttaaaatcaaactaGTAAATTGTACTTtggtgcaaatgttttaaatctagAGGCCCTTACTTCCCACTCGATTGAGATCAACTGTAGAATACCAAGATATCCCCAATAAGGCCCTTACTGTCCATTTCCAAAGGTAGATGTCATCATTGccaaaattatcattttaaacttACAGACAAATATAGTTTccatcaattaaataataaaggaacTGGTCAGGTCCTATATAATATGCTGATTTAAAGCAACACTATGAGCAGAAAAATTATATACCAAAGATATAGAAGGATCACAGTAGGCTTTGGAAAGACAAACCATCAGacaatatattctatatataggtttttttttggcCAAGGTCTGGGGTACTGAATATGAACCACAGGGGCTCCAGGGTCAGTAACTGCAGTCACTAAAAGACTGTTCATACTCAGATCACAATCCATTGTGCTTTCtttgacaaaacacaaaacctgtGATAGTGCCATAACATTGCGgttttaatttagcaaaaacaacaacaataaggaATTATTTATTCGTTTGGTTATATTTTCAACACTGGACACTGGTCTGGTAAGGCCTAGACTGGGACATTTATAGCAAACACAGATGACAAAACCAAGatgaaatgtattacacattGAACGTCCTCTGGCTCCCTGTAGCTTCCATTATCCAAAGCAGTAGTATTCGTCCGAATCCCTCTTAATGTCTTTATGCAATGGAGCTTTATCAAGACCATCTTCAATGATGGGCCCATCAGGAAAGTGCTCCAGGTCTGTTGGGGAGGTGTGGCCCGGATCATCCTCGGCCAAGGTGTCCAGGTAACTGCCGACGGAAATCCCGTCCAGGCCATCGCAGCCATCATGCAGGCTGTCACAGCTGCCCCGCAGAGAGGTGTCCTGGCTCTCCGACAGACTGTACAAACTGCCCGCCAGGCTGCCCTCTCTACTCGCCATGGTGCCCTTCTCATCTATTACCCATTTGATTGACTCGATGCCATCATTAATAGACAGTAACTGCTGCATCAGTTTAACGTCAATGGCA

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115955 lncRNA downstream 52201 22220521 ~ 22220780 (-) True G92955
TU115953 lncRNA downstream 120403 22152372 ~ 22152578 (-) True G92953
TU115945 lncRNA downstream 148239 22044980 ~ 22124742 (-) True G92947
TU115948 lncRNA downstream 179576 22092965 ~ 22093405 (-) True G92948
TU115940 lncRNA downstream 298692 21973984 ~ 21974289 (-) True G92943
TU116050 lncRNA upstream 411447 22686424 ~ 22689677 (-) True G93024
TU116052 lncRNA upstream 415698 22690675 ~ 22691532 (-) True G93026
TU116057 lncRNA upstream 502827 22777804 ~ 22778099 (-) True G93028
TU116062 lncRNA upstream 526394 22801371 ~ 22804384 (-) True G93033
TU116067 lncRNA upstream 564174 22839151 ~ 22839434 (-) True G93038
AMCG00017757 mRNA downstream 869721 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 903492 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 968858 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017753 mRNA downstream 1136421 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017752 mRNA downstream 1359025 20881493 ~ 20913956 (-) True AMCG00017752
AMCG00017763 mRNA upstream 34272 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017776 mRNA upstream 894596 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017777 mRNA upstream 989057 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017782 mRNA upstream 1021711 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 1043116 23318093 ~ 23321930 (-) False AMCG00017780
TU115494 other downstream 2853625 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 2853625 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 3809805 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 4798642 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 6242076 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 1043149 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 1043149 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 1043149 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 3737684 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 3737684 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile