RNA id: TU116054


Basic Information

Item Value
RNA id TU116054
length 376
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G93027
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22777728 ~ 22778103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taatggtatgtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacgcatttcaaaaaagttataaattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggttttgaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaagaccttaatgtgcttcttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115956 lncRNA upstream 545836 22231457 ~ 22231892 (+) True G92956
TU115954 lncRNA upstream 556949 22220524 ~ 22220779 (+) True G92954
TU115952 lncRNA upstream 625148 22152321 ~ 22152580 (+) True G92952
TU115840 lncRNA upstream 1648748 21128700 ~ 21128980 (+) True G92878
TU115808 lncRNA upstream 1892460 20883937 ~ 20885268 (+) True G92849
TU116068 lncRNA downstream 99975 22878078 ~ 22878468 (+) True G93039
TU116134 lncRNA downstream 523512 23301615 ~ 23328984 (+) True AMCG00017783
TU116140 lncRNA downstream 542348 23320451 ~ 23321055 (+) False G93100
TU116141 lncRNA downstream 542348 23320451 ~ 23321055 (+) False G93100
TU116142 lncRNA downstream 542348 23320451 ~ 23321055 (+) True G93100
AMCG00017766 mRNA upstream 90406 22686558 ~ 22687322 (+) True AMCG00017766
AMCG00017765 mRNA upstream 109275 22661066 ~ 22668453 (+) True AMCG00017765
AMCG00017768 mRNA upstream 136817 22615922 ~ 22640911 (+) True AMCG00017768
AMCG00017769 mRNA upstream 181391 22596047 ~ 22596337 (+) True AMCG00017769
AMCG00017764 mRNA upstream 183748 22590793 ~ 22593980 (+) True AMCG00017764
AMCG00017772 mRNA downstream 228920 23007023 ~ 23020463 (+) True AMCG00017772
AMCG00017774 mRNA downstream 323859 23101962 ~ 23129457 (+) True AMCG00017774
AMCG00017773 mRNA downstream 365369 23143472 ~ 23152780 (+) True AMCG00017773
AMCG00017779 mRNA downstream 388244 23166347 ~ 23168345 (+) True AMCG00017779
AMCG00017778 mRNA downstream 435308 23213411 ~ 23215360 (+) True AMCG00017778
TU115792 other upstream 1955781 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 1962182 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3249435 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3354049 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3365738 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1927276 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5864627 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6655309 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9629326 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9683195 32461298 ~ 32465063 (+) True G94838

Expression Profile