RNA id: TU116057


Basic Information

Item Value
RNA id TU116057
length 296
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G93028
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22777804 ~ 22778099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaagcacattaaggtcttggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcaaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116052 lncRNA downstream 86272 22690675 ~ 22691532 (-) True G93026
TU116050 lncRNA downstream 88127 22686424 ~ 22689677 (-) True G93024
TU115974 lncRNA downstream 502827 22272981 ~ 22274977 (-) True G92972
TU115955 lncRNA downstream 557024 22220521 ~ 22220780 (-) True G92955
TU115953 lncRNA downstream 625226 22152372 ~ 22152578 (-) True G92953
TU116062 lncRNA upstream 23272 22801371 ~ 22804384 (-) True G93033
TU116067 lncRNA upstream 61052 22839151 ~ 22839434 (-) True G93038
TU116128 lncRNA upstream 512233 23290332 ~ 23290681 (-) True G93090
TU116130 lncRNA upstream 516720 23294819 ~ 23295369 (-) True G93092
TU116205 lncRNA upstream 517701 23295800 ~ 23296246 (-) True G93159
AMCG00017763 mRNA downstream 411757 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1374544 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1408315 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 1473681 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017753 mRNA downstream 1641244 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017776 mRNA upstream 391474 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017777 mRNA upstream 485935 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017782 mRNA upstream 518589 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 539994 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 552845 23330944 ~ 23345917 (-) True AMCG00017781
TU115494 other downstream 3358448 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3358448 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4314628 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5303465 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 6746899 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 540027 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 540027 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 540027 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 3234562 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 3234562 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile