RNA id: TU116062


Basic Information

Item Value
RNA id TU116062
length 3014
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G93033
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 22801371 ~ 22804384 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataatctagtgtctattaacatgtgtcaatttcagactaaacagttaaacaggactgagaagatatttctcggcattgacagattttattacTATAATTCGGTTTCaacccccagtgtcctattggagggggctggatttatgactgatgtcaatccatgtcatcttttggaaatgccggttggcccgggttcgtagctctgttttgggatttcggctctcgcccgcttcaaagggtttttattacctccaggccctattccccagacatttcacagcagcgATTCCAAGGCATTttgcccattctcggtgccatcctcccaagagcGCCACtttgataactttgggggagaggtcttcttagatcagagcttcagctccaaatgctcttatcaaaatacacccccatTTAACGCTACATATTCAAACTTGGTTCAGATTTTTGCatgacattggaatatagcattgttCTCCTGTGTAGCACAAGCCTGTTTGCACCTCACAATTTCAGCTGCACCACTCCACACTGTGCTATTATCCCCACTGTTTCAACATAGTTTTGCGtagttattggatgaatgtgATGCATTAATATCGCACAAAAACTGGTTATTCACTCTAAGGCTTTCAACACAATTCAAATTCATTTGCGCTATGCGCTTGTGTATTGTcagcacagaaaacatttgcatctcatgttttcaattactgagtcattaccatatgttaataagccatgacattaaaggaacaggactctacatattgaattgatgatcattagcacctgtttggtataattgtttaatcaaacacctgactatatgcctacaaaacccctgactttgtgcaagtgtacctagaagaattgatgatgttttgaaggcaaagggtggtcacaccaaatatggatttgatgtagatttttcttctgttcagtcactttacatttagttaattgataaataaatctattaacatgtctatttttgatagcattcttactttacagcatttattcacacctgcttaaatcttttgcacagtactgtatgtatttaattatagcttcttggttcattttttttctcagactCACTATTTGTCCCACTTATTAAATATCCTCATTATTTCCAAAGGTTTGCAGGGCTTTATAACCCCTAACAGGAGTTAAGAGACTATAGGGCTGCACAACCAATTAGTGAACTGCACAATTATGCCTTGATTTACGGAGCTGCTTTTTAATTAGAAGAATAATTTTCAAAGTTTTCAAAAATCTAACCTGCACATGATTTCAGAAGTGCTGAGATAATCATcctgatattttattaattaccaAGAAAATaccaaaactgaaatacaataatactagtgatatatctatatgtgtatatatgaatgggagttatgtatttctttattaggAAAAACTTAAATTTGTACTTTGAAAACCAGAGCCCTGGTAGAACCTGCTTGATTTAACCTCAGTTTTTACAGTCaatgtcaaatatttattttaatggtagatATTTGTCAGGATGTCATAGAGACATGAAATACCAAATGTAAAGggatgttgtgtttttaaatgcaaaacaatagcATTACCATGGTATTCGTACAATGGTTAAAAGTTAATGTTTTGAAACAGATTACATAATCTGAtgaatgataggttgcgaatgtaACCCCGGTTAtcagaaaaaggaagcactgcccaaggaggaggggtttCTGAGATCGAAAACGTcgctctatcaaagctgccattggcccctgcgcacctcactcaaaacaggtcccttcccacttcctgttttataaaacgtgacgtctgcgtGGGTTTGTCATCTTTTGccacccttgggcagtgcttcctttgtcagataaccggggttgcgtTCACAAAGGAAGCATATCATGCACCACCATGTAACACAGGatcagttgtcacctattagcacagctaatgcaggacaacagcaggctctaccatgacaatcaaaccataaacattgcggAGCATTGGccacttgctccactagcccagatAGGAGTGAgaccacaccagctctacaatatgtagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcatttttctggattttgttgttattctgtctctcactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaatgtacaaaatcagcaggggatcaaatacttttttccctcactgtatacacacagggcgcaggaaccaactcatgcaccacacatggaacacaggagcagttgacgcctgctgattagGCCAGCTAATGCAGGGCACTATTGTGTtaacaaatgaactatgtacacagcagagTATAAGAGCCATGTACAAGTACAAGTGCTTACCATGCATCTAACACACTGTTCATGCActttggaaaaagtgtgtgggcATTGCGACAGGCTGAAGGAGAGAATAGCAAACTTGAATGCTCGGCCCTCATAGGCAAAGcagaggaacttcctgtgtacctgcgcaatagggatgtgaaagtaagtgaTTGATGGCAGTTGCAGGagcgggctgtagtgcaggctcaagccggcagaggagcacctcTCGTGGGTTTTATTGCtgctgctagcactcctgctgtggaggaaaaaaacaacacagcaagcaatcggataatatatggcactatattaacatgattattattttgaaatgctctatttgtgaaccaaaactgaaaccgaaagtgcagCTAGAGCTCCAGTTATCTGACAGACAGAATctaaattagctataaatataactaataagatacacaatagagacagagatgtagcaaaacggtggtgaacaacactattagtgaagccagccagccgaaatatgcagtttttaatgtctaatgcaacacacagtcacagaaagctcacgttctcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116057 lncRNA downstream 23272 22777804 ~ 22778099 (-) True G93028
TU116052 lncRNA downstream 109839 22690675 ~ 22691532 (-) True G93026
TU116050 lncRNA downstream 111694 22686424 ~ 22689677 (-) True G93024
TU115974 lncRNA downstream 526394 22272981 ~ 22274977 (-) True G92972
TU115955 lncRNA downstream 580591 22220521 ~ 22220780 (-) True G92955
TU116067 lncRNA upstream 34767 22839151 ~ 22839434 (-) True G93038
TU116128 lncRNA upstream 485948 23290332 ~ 23290681 (-) True G93090
TU116130 lncRNA upstream 490435 23294819 ~ 23295369 (-) True G93092
TU116205 lncRNA upstream 491416 23295800 ~ 23296246 (-) True G93159
TU116222 lncRNA upstream 522141 23326525 ~ 23329744 (-) True G93165
AMCG00017763 mRNA downstream 435324 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1398111 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1431882 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017759 mRNA downstream 1497248 21296047 ~ 21304123 (-) True AMCG00017759
AMCG00017753 mRNA downstream 1664811 21129357 ~ 21136560 (-) True AMCG00017753
AMCG00017776 mRNA upstream 365189 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017777 mRNA upstream 459650 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017782 mRNA upstream 492304 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 513709 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 526560 23330944 ~ 23345917 (-) True AMCG00017781
TU115494 other downstream 3382015 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3382015 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4338195 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5327032 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 6770466 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 513742 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 513742 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 513742 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 3208277 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 3208277 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile