RNA id: TU116142



Basic Information


Item Value
RNA id TU116142
length 310
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G93100
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23320451 ~ 23321055 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACGTTTGGGAATTTCCTTCTGATCTCTTCCACAAAAATTGGTaggtttttgattttgttcttgttgatCCAGACCGTTGTGACACTGGGCATGTATGGAAACTTCACGTGAGAGGTGTAGTTGTTGCAGTCTAGAATCAGGGTGGTGAGCTTCTCCAGTTCCCCCAGAAGAGCTGGACTCCTCTTCCAACAGGTTGAAGCTGAGGTCCAGCACCTCCAGGACTTCCCGGTGTTGGAAAATGGTGCTGTAGGGGATCTCCACCAGGTTCTGGTAAGCGAAGGAGAGATGCCGTAACCCCAACATGTAGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU116068 lncRNA upstream 441983 22878078 ~ 22878468 (+) True G93039
TU116054 lncRNA upstream 542348 22777728 ~ 22778103 (+) True G93027
TU115956 lncRNA upstream 1088559 22231457 ~ 22231892 (+) True G92956
TU115954 lncRNA upstream 1099672 22220524 ~ 22220779 (+) True G92954
TU115952 lncRNA upstream 1167871 22152321 ~ 22152580 (+) True G92952
TU116143 lncRNA downstream 9435 23330490 ~ 23330720 (+) True G93101
TU116144 lncRNA downstream 9679 23330734 ~ 23330972 (+) True G93102
TU116170 lncRNA downstream 106677 23427732 ~ 23429155 (+) True G93125
TU116176 lncRNA downstream 120354 23441409 ~ 23441770 (+) True G93131
TU116284 lncRNA downstream 354195 23675250 ~ 23675551 (+) True G93207
AMCG00017786 mRNA upstream 23804 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017771 mRNA upstream 31096 23279749 ~ 23289355 (+) True AMCG00017771
AMCG00017770 mRNA upstream 44281 23271599 ~ 23276170 (+) True AMCG00017770
AMCG00017775 mRNA upstream 70604 23227857 ~ 23249847 (+) True AMCG00017775
AMCG00017778 mRNA upstream 105091 23213411 ~ 23215360 (+) True AMCG00017778
AMCG00017783 mRNA downstream 4599 23325654 ~ 23329569 (+) False AMCG00017783
AMCG00017785 mRNA downstream 27303 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017784 mRNA downstream 118691 23439746 ~ 23443917 (+) True AMCG00017784
AMCG00017794 mRNA downstream 289183 23610238 ~ 23615963 (+) True AMCG00017794
AMCG00017793 mRNA downstream 306846 23627901 ~ 23632668 (+) True AMCG00017793
TU115792 other upstream 2498504 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2504905 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3792158 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 3896772 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 3908461 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1384324 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5321675 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6112357 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 9086374 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9140243 32461298 ~ 32465063 (+) True G94838

Expression Profile