RNA id: TU116170



Basic Information


Item Value
RNA id TU116170
length 574
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G93125
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23427732 ~ 23429155 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAAGCTCTTCCTCAGTCAGGGGGAGGTAGTGGTCCACCAGAGACTCGGATGTGCTCAGTGCCGAGTCCACTCCAGTGCTCACCATCTTCACCACACGGCTGCCCATCACTGTGTTCACACTGCCATTCACCATCGCTTTGGTCATTTCCATACTCTCCTGCACTGCCCCCCTGGTCTTGTCCACCACTCCAGTGATGGTGTAAGACACCGTGTCCTTGGCACCAGTCACAGTGATGGCCACTGCATCCTTGGCTCCAGTTACAACATCCTTAGCATTGGCGACAACCTGTCAGATGGCTGATGAAGGATTGGCAAAGTCTTCTCAATTTTATCCAGACCCTTACAAGCCAGGTCATTTGCTACTGTTTGAGGCTCCAGTTTGTTGATGATAGGCATGGCACTGGTAAGAGCAACAGAAGTAATGGTTTTCACACTCATCTCTGCCACTTCACACATAGACTTGATGTAGGGGTGATTCTCCTTAGTGTTACAATATACATTGGAGACCATGTCATAGGTAGAGCTAACCAGGGGCAGGTTAGCAACTCTAGCTACCACATTCTGCAGAGAAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU116144 lncRNA upstream 96760 23330734 ~ 23330972 (+) True G93102
TU116143 lncRNA upstream 97012 23330490 ~ 23330720 (+) True G93101
TU116134 lncRNA upstream 98748 23301615 ~ 23328984 (+) True AMCG00017783
TU116176 lncRNA downstream 12254 23441409 ~ 23441770 (+) True G93131
TU116284 lncRNA downstream 246095 23675250 ~ 23675551 (+) True G93207
TU116285 lncRNA downstream 247645 23676800 ~ 23677092 (+) True G93208
TU116309 lncRNA downstream 330585 23759740 ~ 23765482 (+) False G93231
TU116310 lncRNA downstream 330585 23759740 ~ 23765482 (+) False G93231
AMCG00017785 mRNA upstream 75454 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017783 mRNA upstream 98163 23325654 ~ 23329569 (+) False AMCG00017783
AMCG00017786 mRNA upstream 131085 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017771 mRNA upstream 138377 23279749 ~ 23289355 (+) True AMCG00017771
AMCG00017770 mRNA upstream 151562 23271599 ~ 23276170 (+) True AMCG00017770
AMCG00017784 mRNA downstream 10591 23439746 ~ 23443917 (+) True AMCG00017784
AMCG00017794 mRNA downstream 181083 23610238 ~ 23615963 (+) True AMCG00017794
AMCG00017793 mRNA downstream 198746 23627901 ~ 23632668 (+) True AMCG00017793
AMCG00017798 mRNA downstream 219053 23648208 ~ 23671667 (+) True AMCG00017798
AMCG00017803 mRNA downstream 284788 23713943 ~ 23748256 (+) True AMCG00017803
TU115792 other upstream 2605785 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2612186 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3899439 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 4004053 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 4015742 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1276224 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5213575 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 6004257 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 8978274 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9032143 32461298 ~ 32465063 (+) True G94838

Expression Profile