RNA id: TU116176


Basic Information

Item Value
RNA id TU116176
length 362
lncRNA type intronic
GC content 0.39
exon number 1
gene id G93131
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23441409 ~ 23441770 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtccagatcattaatatagattagaaaaagcaaaggccctaatactgatccctgtggaactccactaacaacctcactccagttagaagcgactcctctaatcgacaccctctgtttcctagacatcagccagttcataatccatctacttacattaccctgaatgcctacagcttccaatttgaggatcagtctttggtgtggaacctaatcaaaagctttttggaaatctaagtatatcatatcatatgctttcacgtgatctacagctgcagttgcatgttcataaaattctaataaattagtaagacatgatctgcctcgtctaaacccatgtcgACTATCTCCAACAATATGGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116170 lncRNA upstream 12254 23427732 ~ 23429155 (+) True G93125
TU116144 lncRNA upstream 110437 23330734 ~ 23330972 (+) True G93102
TU116143 lncRNA upstream 110689 23330490 ~ 23330720 (+) True G93101
TU116140 lncRNA upstream 120354 23320451 ~ 23321055 (+) False G93100
TU116284 lncRNA downstream 233480 23675250 ~ 23675551 (+) True G93207
TU116285 lncRNA downstream 235030 23676800 ~ 23677092 (+) True G93208
TU116309 lncRNA downstream 317970 23759740 ~ 23765482 (+) False G93231
TU116310 lncRNA downstream 317970 23759740 ~ 23765482 (+) False G93231
TU116313 lncRNA downstream 317970 23759740 ~ 23765482 (+) False G93231
AMCG00017785 mRNA upstream 89131 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017783 mRNA upstream 111840 23325654 ~ 23329569 (+) False AMCG00017783
AMCG00017786 mRNA upstream 144762 23295493 ~ 23296647 (+) True AMCG00017786
AMCG00017771 mRNA upstream 152054 23279749 ~ 23289355 (+) True AMCG00017771
AMCG00017770 mRNA upstream 165239 23271599 ~ 23276170 (+) True AMCG00017770
AMCG00017794 mRNA downstream 168468 23610238 ~ 23615963 (+) True AMCG00017794
AMCG00017793 mRNA downstream 186131 23627901 ~ 23632668 (+) True AMCG00017793
AMCG00017798 mRNA downstream 206438 23648208 ~ 23671667 (+) True AMCG00017798
AMCG00017803 mRNA downstream 272173 23713943 ~ 23748256 (+) True AMCG00017803
AMCG00017800 mRNA downstream 325601 23767371 ~ 23770666 (+) True AMCG00017800
TU115792 other upstream 2619462 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2625863 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 3913116 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 4017730 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 4029419 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1263609 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 5200960 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 5991642 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 8965659 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 9019528 32461298 ~ 32465063 (+) True G94838

Expression Profile