RNA id: TU116205


Basic Information

Item Value
RNA id TU116205
length 447
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G93159
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23295800 ~ 23296246 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATGAATGACTCATTAATAGCAGATGCGAAATATACTATTACAGAGCCAGTAGAATACAAGTTCAAATGTCTTAATTTAACTCCGTAAAATAACACTTAAATATTTCTGTTCTATAATTACATATCTTGTTCCAATAGCTTgaacaaaaatgcatacatgcaaAAAGGGTGCAGCATGTCttatgaaagaaaagaaagcagcaaTATGTGTGGTCCTACCTGCAGAAAAGGCAAGGTCCGGCATGTGTCCTGTTGCACTTGGTTGTTGGTGATGGGTAAGATGGACTGCGAGTCGGATCTTCGCCTGAAAACAAAGTGGTCCCAAAACTTTTTGGCATTTCTCAGCGCAGGGGTATAGGTCGGGACCCTAAAACCGGCGGCCGGTGTCGGTTTCAAACCACCGAAGAAGCTGCCCAACCCCAGGCGAGCCTCCTGGCCTGTGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116130 lncRNA downstream 431 23294819 ~ 23295369 (-) True G93092
TU116128 lncRNA downstream 5119 23290332 ~ 23290681 (-) True G93090
TU116067 lncRNA downstream 456366 22839151 ~ 22839434 (-) True G93038
TU116062 lncRNA downstream 491416 22801371 ~ 22804384 (-) True G93033
TU116057 lncRNA downstream 517701 22777804 ~ 22778099 (-) True G93028
TU116222 lncRNA upstream 30279 23326525 ~ 23329744 (-) True G93165
TU116235 lncRNA upstream 147965 23444211 ~ 23540120 (-) True G93173
TU116417 lncRNA upstream 611329 23907575 ~ 23910679 (-) True G93324
TU116446 lncRNA upstream 738450 24034696 ~ 24037610 (-) True G93350
TU116452 lncRNA upstream 747948 24044194 ~ 24046369 (-) True G93355
AMCG00017777 mRNA downstream 16758 23264034 ~ 23279042 (-) True AMCG00017777
AMCG00017776 mRNA downstream 101256 23169573 ~ 23194544 (-) True AMCG00017776
AMCG00017763 mRNA downstream 929753 22309249 ~ 22366047 (-) True AMCG00017763
AMCG00017757 mRNA downstream 1892540 21399301 ~ 21403260 (-) True AMCG00017757
AMCG00017758 mRNA downstream 1926311 21316467 ~ 21369489 (-) True AMCG00017758
AMCG00017782 mRNA upstream 442 23296688 ~ 23313459 (-) True AMCG00017782
AMCG00017780 mRNA upstream 21847 23318093 ~ 23321930 (-) False AMCG00017780
AMCG00017781 mRNA upstream 34698 23330944 ~ 23345917 (-) True AMCG00017781
AMCG00017787 mRNA upstream 59360 23355606 ~ 23388495 (-) True AMCG00017787
AMCG00017789 mRNA upstream 115415 23411661 ~ 23422126 (-) True AMCG00017789
TU115494 other downstream 3876444 19412987 ~ 19419356 (-) False G92591
TU115492 other downstream 3876444 19418201 ~ 19419356 (-) True G92591
TU115289 other downstream 4832624 18462784 ~ 18463176 (-) True G92436
TU115048 other downstream 5821461 17468605 ~ 17474339 (-) False AMCG00017665
TU114912 other downstream 7264895 16030456 ~ 16030905 (-) False G92129
TU116215 other upstream 21880 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other upstream 21880 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other upstream 21880 23318126 ~ 23321954 (-) False AMCG00017780
TU116981 other upstream 2716415 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 2716415 26012661 ~ 26015492 (-) False AMCG00017866

Expression Profile