RNA id: TU116285


Basic Information

Item Value
RNA id TU116285
length 293
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G93208
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 23676800 ~ 23677092 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAGCACTAATGGTTTGAATGCATCTCAGAATAAAACATGCTCATTCCCAGTGCTGTTTAGGATCTTTAAGAGCTATTTGTGACGGAATCCAGTGACTGctgtcaaataaacaatatgacaGCTAgtgaatgtaatttatattgGACGTACCTttccaagaaacaaaacaaaatctccaACAGTATTGATAGCCGCGACTCTCAATGCATTTTCCACCAGAATTACAAAGGCGTCTTTTGCCGAGGTGCAGAAATTGGTGCTATTGATGGCTGTAGCTGCATATGcattctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116284 lncRNA upstream 1249 23675250 ~ 23675551 (+) True G93207
TU116176 lncRNA upstream 235030 23441409 ~ 23441770 (+) True G93131
TU116170 lncRNA upstream 247645 23427732 ~ 23429155 (+) True G93125
TU116144 lncRNA upstream 345828 23330734 ~ 23330972 (+) True G93102
TU116143 lncRNA upstream 346080 23330490 ~ 23330720 (+) True G93101
TU116309 lncRNA downstream 82648 23759740 ~ 23765482 (+) False G93231
TU116310 lncRNA downstream 82648 23759740 ~ 23765482 (+) False G93231
TU116313 lncRNA downstream 82648 23759740 ~ 23765482 (+) False G93231
TU116314 lncRNA downstream 82648 23759740 ~ 23765482 (+) False G93231
TU116308 lncRNA downstream 84369 23761461 ~ 23765482 (+) True G93231
AMCG00017798 mRNA upstream 5133 23648208 ~ 23671667 (+) True AMCG00017798
AMCG00017793 mRNA upstream 44132 23627901 ~ 23632668 (+) True AMCG00017793
AMCG00017794 mRNA upstream 60837 23610238 ~ 23615963 (+) True AMCG00017794
AMCG00017784 mRNA upstream 232883 23439746 ~ 23443917 (+) True AMCG00017784
AMCG00017785 mRNA upstream 324522 23348358 ~ 23352278 (+) True AMCG00017785
AMCG00017803 mRNA downstream 36851 23713943 ~ 23748256 (+) True AMCG00017803
AMCG00017800 mRNA downstream 90279 23767371 ~ 23770666 (+) True AMCG00017800
AMCG00017801 mRNA downstream 104776 23781868 ~ 23793676 (+) True AMCG00017801
AMCG00017802 mRNA downstream 118707 23795799 ~ 23799246 (+) True AMCG00017802
AMCG00017797 mRNA downstream 167830 23844922 ~ 23857827 (+) True AMCG00017797
TU115792 other upstream 2854853 20820511 ~ 20821947 (+) False AMCG00017747
TU115788 other upstream 2861254 20799595 ~ 20815546 (+) False AMCG00017747
TU115510 other upstream 4148507 19444172 ~ 19528293 (+) True AMCG00017712
TU115496 other upstream 4253121 19421310 ~ 19423679 (+) False AMCG00017710
TU115469 other upstream 4264810 19402086 ~ 19411990 (+) False AMCG00017710
TU116638 other downstream 1028287 24705379 ~ 24715621 (+) False AMCG00017829
TU117380 other downstream 4965638 28642730 ~ 28643983 (+) False AMCG00017910
TU117593 other downstream 5756320 29433412 ~ 29450347 (+) True G94275
TU118260 other downstream 8730337 32407429 ~ 32411373 (+) False AMCG00018012
TU118291 other downstream 8784206 32461298 ~ 32465063 (+) True G94838

Expression Profile