RNA id: TU116446


Basic Information

Item Value
RNA id TU116446
length 2871
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G93350
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24034696 ~ 24037610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATATATCCATAGATGTTTATTAAATGATATCCAATAATACAATATGCAGGAATATTATAGAATACAACTGTATAGACTTGTGTTCACAGTTTGATATGACAAAATGTCATTACAGAATTCCCATTGGACTACCAACCTATAAGTCTGCCAGAAATATATCGTTTAGTACAAACTGATATCTGTAGTATAACAGTCAaccaaaatacagtatttttgtgATAAATTGAATCAAAATCTTGCTAAAACCTTACTTGCCCGTTCAGTCTTAttaattcaaaaaatatattacaatttgtggtataaaaaaaatctgcacagTTTTATACaggtttaaaaaatgcaaacaggtGAAACCAGAgataataagaaatatatacaccTTTGGCCATGCTGGAACTGTTATGTTGCAGGATATCTTTCCACAAGACTACAAACCACTGAAAAAAATCACAGACTTAAtaagttttggttttgttatccATCTGTGTATACTCCCAGCTACTGTTAAAAGTACAAAACctattaaatacacaatgacTACATCTAAGGCATCAGTctatgaaaaaattaaaagcgTGCAACAACCTCTCATTCCAAGTGGTCTAGAGACAACATACTCTACTTATAGCAtcaaatattgtaaatgttttagtgATAGCACTCCTTGAAGCCTGGGGAACTTAAAGTTGGATGATTGAAGCATATCAAAGAATGAGGTGCATTAACAATATTTTTGActttaaataaagtgcagaaTAATAGTGTCAATATTATATAGGcatctctttttaaataaagtccTCTCTCATTACCtaacaaatcaaatacattttaaaaagaaaactggcagacacacacagaagtCATGCAACCTTCTCTCTGCTTAGCATCTCAGTTTCACCAAAAGGAtaagatatacatttatattgcatcCCAAAACCAAATTGAATTCATCAAAACAATAATGCCCAGAAAAGAGTTCACATTTTGACAGAAAAGTCTGCTGTCTGCCTAATGACATATCCACATTCCCTATGTACAAATGTTTACTAATTCACAATATCCCTTTTGCCctcttaaaacaaaagaaacctcTCACTGGAGAATACAGAGTCGGAAGCTGTATAATACTTCACCCCATAACAGAGCATTTCAAAGCAGGTTGTAATTCAAAAACAGACGCGATTCTCCAGACCGTGTTAATGCTTTCCTCTGTCTGTGCATCCACAGCAGTATGAAGATCACTGTGTAAACGAGATCTCGatatttaaatcagtttataaaaaatagaaatggcattattattgatgtacaaaaatatataaagtagaTGTAGGAAAGACTACTGCTGAGGTGTTGATCATGTGGTGAGATTGAGGGTAAAGGCTGTCATTTATAATTGTTCCTCACAGCTTTCAATTAGGACAGAGCAAACAACTatgacacacataaacacaactGGATAATCAAAGTGGTTTAAAAAGTCCCTTGACTGGCTCGGCAGGGACACTGGGATAAAGGATGGGTCTGGAGGTGAGTGGGCCCAAAGTTTGACATCTTTGGTGTTTAAAGTGACCTTAAATTTGTCGAAATCGCCTTTTTATACATTGAATTTCACAGCTGGTCGATGGAATTTCGAACACCACTGTCTATTGAGTAACTCTTTGGGATTTTTACTGTGGCggtaacattttgtattattactattaatttattttagtttatttgagATTTTATGTTGGCAAAATGACACTTGCAgggttaaaaacacacaaacaaaacgtATAAAACTGGAATATGAACTTTATAGCAGCCCTTCCCAACATGATATACTATATTGGGTGCAAAATATGTCTGAAAGGCAAACACCTTGGTACATTAGCAAGAAGACCTCCATGCAGCCCACCGTCTATCCTGTAGTGTCCTTAAAAACGATTTCCCCTGGACTTGTTGGACTCTCCCTTCCACAAACACCCCACAAAGGTTACATCAATGATTCAGGTCTGCCCAATGAGAGGTCTGTGATTGAAATAATTAACTTAACGGGATTAGCAAATGGATTACACAATGGTTGGAAAAGTAGCTGGTTTTACAAGCAGTGGTGTCAGAGTGTAATAAGACCTTCAATGTACTGTGTGCCTCCCCCTAgaaaggacatttatttttgttttgttttcaaattaagtaACTTTCAGGGTGTCCAGAAGTGCAGATCATAATATTGGTGAcagtttaaaatggaaaactaaCCAGGATTGATTGTATTGGtttcattaaaatcaaaaatCTTACAGCTGGCTTTAACAAGCAAAGCTGGCATCTAAGAGTATTTACATGAGGGAGGCCACAAGTACATCtaagtgtacatatacatacatactgtgtgtgtgtgtgtgtgtacatacacacacacacatatacatacacagtatatatttctGACCAGCTTGCAAATAACTCAGCCTCTCATAAAATATCACAtaagattatatattaaaaaaaaaaaaaaaaaaaaaaaattcacattATGCAGGTGTGACCCGAGGTTTTATAAATACTAAGGAGCTATCTGTACTACATATGGACTGTGTGGATTGACTGCTCTAATCATCTGTACAGAGGCCCATGATGCACCGCAGCAGTGGCTCAGACCAGCTGAACCGTGGTGCGGACAGTTGTGTGTCAGTGGCTCAGACGAGTAAGTGCCTCTTCTTGTGGAGAGCCAGGTGGTCAGAGCGCGAGAAGCTGCGCTCGCAGTCCGGGCACTGGAAGGGCTTGATGCCGGTGTGCTTCCGGAAGTGTCTCGTGAGCTCGTCGGAGCGGGCGAACTTCCACGTGCAGCCATCCCACATGCACTTGTATGGCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116417 lncRNA downstream 124017 23907575 ~ 23910679 (-) True G93324
TU116235 lncRNA downstream 494576 23444211 ~ 23540120 (-) True G93173
TU116222 lncRNA downstream 704952 23326525 ~ 23329744 (-) True G93165
TU116205 lncRNA downstream 738450 23295800 ~ 23296246 (-) True G93159
TU116130 lncRNA downstream 739327 23294819 ~ 23295369 (-) True G93092
TU116452 lncRNA upstream 6584 24044194 ~ 24046369 (-) True G93355
TU116513 lncRNA upstream 227762 24265372 ~ 24266487 (-) False AMCG00017819
TU116522 lncRNA upstream 263810 24301420 ~ 24301980 (-) True G93399
TU116575 lncRNA upstream 467772 24505382 ~ 24505610 (-) True G93434
TU116666 lncRNA upstream 639555 24677165 ~ 24679900 (-) True G93500
AMCG00017812 mRNA downstream 140751 23885184 ~ 23893945 (-) True AMCG00017812
AMCG00017811 mRNA downstream 150242 23875123 ~ 23884454 (-) True AMCG00017811
AMCG00017804 mRNA downstream 171040 23857838 ~ 23863656 (-) True AMCG00017804
AMCG00017806 mRNA downstream 194533 23821734 ~ 23840163 (-) True AMCG00017806
AMCG00017808 mRNA downstream 222248 23795913 ~ 23812448 (-) True AMCG00017808
AMCG00017815 mRNA upstream 11212 24048822 ~ 24053932 (-) True AMCG00017815
AMCG00017818 mRNA upstream 81867 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017819 mRNA upstream 227069 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017824 mRNA upstream 402926 24440536 ~ 24568029 (-) True AMCG00017824
AMCG00017827 mRNA upstream 553407 24591017 ~ 24596789 (-) True AMCG00017827
TU116215 other downstream 712742 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 712742 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 712742 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4615340 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1975051 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1975051 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 2066416 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 2071450 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 4065689 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile