RNA id: TU116522


Basic Information

Item Value
RNA id TU116522
length 561
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G93399
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24301420 ~ 24301980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTACTTAAAAATTTCCTTCTTTTCCAAAGAAAATCATTTagttttgtccattaaaataacatcaaattgatcagaaatacactgtagacattgttaatgttgtaaatgactattgtagctggaaatggctgatttgtaatggaatatctacataggcgtacagaggcccattatcagcaaccatcagtcctgtgttctaatggcacgttgtgtttgctaatcaagtttataattttaaaaggttaATTGATCATTTGAAAACCCTTtagcaattatgttagcacagctgaaaactgttgtgctgattaaagaagcaataaaactggccttctttagactagttgagtatctggagcaccagcaattgtgggttcgattacaggctcaaaatggccagaaacaaataactcttctgaaactcatcagtctattcttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaactgaagatctcgtacaacgctgtgtactactcagcacaaactggctctaaccagaatagaaagaggagtgggaggccccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116513 lncRNA downstream 34933 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 255051 24044194 ~ 24046369 (-) True G93355
TU116446 lncRNA downstream 263810 24034696 ~ 24037610 (-) True G93350
TU116417 lncRNA downstream 390741 23907575 ~ 23910679 (-) True G93324
TU116235 lncRNA downstream 761300 23444211 ~ 23540120 (-) True G93173
TU116575 lncRNA upstream 203402 24505382 ~ 24505610 (-) True G93434
TU116666 lncRNA upstream 375185 24677165 ~ 24679900 (-) True G93500
TU116683 lncRNA upstream 423958 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA upstream 426862 24728842 ~ 24730222 (-) False G93509
TU116771 lncRNA upstream 620487 24922467 ~ 24927188 (-) True G93576
AMCG00017819 mRNA downstream 30825 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017818 mRNA downstream 48336 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017815 mRNA downstream 247488 24048822 ~ 24053932 (-) True AMCG00017815
AMCG00017812 mRNA downstream 407475 23885184 ~ 23893945 (-) True AMCG00017812
AMCG00017811 mRNA downstream 416966 23875123 ~ 23884454 (-) True AMCG00017811
AMCG00017824 mRNA upstream 138556 24440536 ~ 24568029 (-) True AMCG00017824
AMCG00017827 mRNA upstream 289037 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017828 mRNA upstream 309449 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017826 mRNA upstream 326391 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017834 mRNA upstream 383323 24685303 ~ 24701049 (-) True AMCG00017834
TU116215 other downstream 979466 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 979466 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 979466 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 4882064 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1710681 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1710681 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1802046 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1807080 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3801319 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile