RNA id: TU116575



Basic Information


Item Value
RNA id TU116575
length 229
lncRNA type intronic
GC content 0.49
exon number 1
gene id G93434
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24505382 ~ 24505610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ctccctgcccccctggtccctagtttaaatgattctcaatttctctgcccatatgctctcccaatgcattagccccccttctgtttagatgtagaccgtccggtttgtacaggtcccatctatcccagaagaaagaccaatgctccataaacctaaacccctcttccctacaccaagatttcaaccacgtgttaaactttctaatctctgcctgtctccctggcctggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU116522 lncRNA downstream 203402 24301420 ~ 24301980 (-) True G93399
TU116513 lncRNA downstream 238895 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 459013 24044194 ~ 24046369 (-) True G93355
TU116446 lncRNA downstream 467772 24034696 ~ 24037610 (-) True G93350
TU116417 lncRNA downstream 594703 23907575 ~ 23910679 (-) True G93324
TU116666 lncRNA upstream 171555 24677165 ~ 24679900 (-) True G93500
TU116683 lncRNA upstream 220328 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA upstream 223232 24728842 ~ 24730222 (-) False G93509
TU116771 lncRNA upstream 416857 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 442048 24947658 ~ 24949136 (-) True AMCG00017839
AMCG00017819 mRNA downstream 234787 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017818 mRNA downstream 252298 24119477 ~ 24253084 (-) True AMCG00017818
AMCG00017815 mRNA downstream 451450 24048822 ~ 24053932 (-) True AMCG00017815
AMCG00017812 mRNA downstream 611437 23885184 ~ 23893945 (-) True AMCG00017812
AMCG00017811 mRNA downstream 620928 23875123 ~ 23884454 (-) True AMCG00017811
AMCG00017827 mRNA upstream 85407 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017828 mRNA upstream 105819 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017826 mRNA upstream 122761 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017834 mRNA upstream 179693 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017833 mRNA upstream 210840 24716450 ~ 24725692 (-) True AMCG00017833
TU116215 other downstream 1183428 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1183428 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1183428 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5086026 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1507051 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1507051 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1598416 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1603450 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3597689 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile