RNA id: TU116666


Basic Information

Item Value
RNA id TU116666
length 1529
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G93500
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24677165 ~ 24679900 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACAcctaaaagcatttatttttttatgcaaaaaaaaaaaaaaaaaattaaatatggtCACGTGTACATAAACTGTACACAGCTATGCCAAAACAACGCCTGGAATCATAGTATCAATGCAACAAGTAtttcactaaaataaaatataaaatgagctGGAAACAGGGAGACAAACTGGCaaaacatgttgaaaaatattttcagtctctaaaaacactcaaaatgaattaacagttctgaactgttttatttaattttgcaggCATCTAAAAtccaacagtttattttttttatgttttttttttatttttatttaaaacctttgCGTAAGCATCATTGTTTAATGTGGTAATTAACATCACCCCTGGAAAACGGTACATTTTTTGCACTCTCCTTTCAttccattacaaaaatgtaaaatctgcactaagttaaaaataaaaggcctCTGTAAAAGAACCAGATTACCTGCTAGAGCTTCAAAACATTTCACCTTGGTTAAAAATGTAGGCAAGAACTAAATCTGAAAAACATCAGGGACAGGAATCCGATGGGAATGGTAAAATCTGAACAGATCTGTCAAATCTAGAACAAGCAATTAACttagaggggagaaaaaaaaaacacacacacagatcttcCTCTGTGAGCTCCACTGGAAATACTCAGTTTTATGCCGAATATCCAGAGCCAGGCATCCTTTACCCAACAGAGTTCAGGCTAAAACTCAAAGATTTCTTCTGCAGCAGGAGGCAGCGGGACTGTTTGGCTTAGGATTCTCTTTAAAGTCTATGTGGCGACTCCTGTTGAAAGTAAAATTGCTTTCAGCAAACAAAGCCCATGACAACCAAAAGTAAGACATCTGCCttgacaaattaatatattcatgtttaGGGACTGCACATGTTGTATAACCagattaatatttgaaaaggtCATAAAAATAAGTCTCAGTGAAGCATAAACGGATGGTTGGACCTCCATTCAATGAGCTTATATGGTTTTCAAAAGGTTTTTCGCTGAGGAGAAAGCTTGCTTCAAAAATAGGGTTCGGAAGCAGTATTGTCTCTTCTTTTTCAGGGCAAAGAGCTTTACAGTCAAGGAAGTTCAGTTTCTGTACAGTGATGGGAGTCCTGAAGCAGGCGTTCTACTTATGTCTTCGGAAGATCTTTCTACCTTTGTAAATCCATCTGTCTCTGTGGCGCCACCCTCTTGGGGTCAGATTCTTTCTGCTGTTTTGGTATTTTGATGGTGATGGGCTCCACGATGCCGGGGCTGTCCTGGGGCGCCGCCGTCCTCTTCCTGCCACGCCCCCCAGCCTTCGCCTCTACGCCCTTCTCCATGCTGCTCGCTGGCTGAGTCTTTGGGGGCCTCCCTCGCCTGGGTTTTGGGATCACCGAAGCGCCCATCTCGTCTGAAGCCTTGTCGTCGGCGCTCTGGTGCATGTTCTCGGCCCCGTCTGCAACGGGGGCGGCCCGTTTCTTGCCTCGCTCCATGCTGGCATTGCCTGGAGCGGACGGCTCGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116575 lncRNA downstream 171555 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 375185 24301420 ~ 24301980 (-) True G93399
TU116513 lncRNA downstream 410678 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 630796 24044194 ~ 24046369 (-) True G93355
TU116446 lncRNA downstream 639555 24034696 ~ 24037610 (-) True G93350
TU116683 lncRNA upstream 46038 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA upstream 48942 24728842 ~ 24730222 (-) False G93509
TU116771 lncRNA upstream 242567 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 267758 24947658 ~ 24949136 (-) True AMCG00017839
TU116793 lncRNA upstream 270068 24949968 ~ 24950248 (-) True G93591
AMCG00017826 mRNA downstream 27167 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017828 mRNA downstream 65158 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017827 mRNA downstream 80376 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017824 mRNA downstream 109136 24440536 ~ 24568029 (-) True AMCG00017824
AMCG00017819 mRNA downstream 406570 24264679 ~ 24270595 (-) True AMCG00017819
AMCG00017834 mRNA upstream 5403 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017833 mRNA upstream 36550 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017832 mRNA upstream 52795 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017838 mRNA upstream 79481 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017840 mRNA upstream 119183 24799083 ~ 24839147 (-) True AMCG00017840
TU116215 other downstream 1355211 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1355211 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1355211 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5257809 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1332761 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1332761 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1424126 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1429160 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3423399 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile