RNA id: TU116675


Basic Information

Item Value
RNA id TU116675
length 506
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G93509
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24725938 ~ 24730222 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtaaaaagaaaatgaaatgtggaaacatttagtttggctataaatctgaaataaaatgccATTACTCAGGTTTGGGGCTAAACttgcttttatttcacaaagGACATAGATGTTACTCGCGAGGCCTCAACCACAGTGATGATCTCGCTCACGTCAACGCCATCCTTCTGCACGGGTGTCGTGTGTTGGATCAGGTCGCTTCAAGTGTTTATTGTTCTGGATCCACTACTGTTCCCTTCTCGGAGACGTAGATACCATCCAAGAATTTTCTGATATCCTTGTTTTTGACTGTGGTTGCCTGCTGGATCAGAGCAGCTGCAAAACAAAGACTTGGGTAAGTCAATCCTGACGGTCAGTGCAGTTACATTCACATAGATTATCACAGAATTAGCAGTCAATCTTAAAAGCACACACAACATTTAGGTCATAACTAGCCAATTTATTCTCTGGTTTTAATCAAAGTTATAAAACAACCAAATCCCCTTCCCTAGAAGTTAAAATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116666 lncRNA downstream 48942 24677165 ~ 24679900 (-) True G93500
TU116575 lncRNA downstream 223232 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 426862 24301420 ~ 24301980 (-) True G93399
TU116513 lncRNA downstream 462355 24265372 ~ 24266487 (-) False AMCG00017819
TU116452 lncRNA downstream 682473 24044194 ~ 24046369 (-) True G93355
TU116771 lncRNA upstream 192245 24922467 ~ 24927188 (-) True G93576
TU116791 lncRNA upstream 217436 24947658 ~ 24949136 (-) True AMCG00017839
TU116793 lncRNA upstream 219746 24949968 ~ 24950248 (-) True G93591
TU116811 lncRNA upstream 277462 25007684 ~ 25009604 (-) False AMCG00017844
TU116851 lncRNA upstream 376580 25106802 ~ 25107082 (-) True G93639
AMCG00017833 mRNA downstream 3150 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017834 mRNA downstream 27793 24685303 ~ 24701049 (-) True AMCG00017834
AMCG00017826 mRNA downstream 78844 24628371 ~ 24649998 (-) True AMCG00017826
AMCG00017828 mRNA downstream 116835 24611429 ~ 24612007 (-) True AMCG00017828
AMCG00017827 mRNA downstream 132053 24591017 ~ 24596789 (-) True AMCG00017827
AMCG00017832 mRNA upstream 2473 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017838 mRNA upstream 29159 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017840 mRNA upstream 68861 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017836 mRNA upstream 173560 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017837 mRNA upstream 197949 24928171 ~ 24942633 (-) True AMCG00017837
TU116215 other downstream 1406888 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1406888 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1406888 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5309486 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1282439 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1282439 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1373804 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1378838 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3373077 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile