RNA id: TU116771


Basic Information

Item Value
RNA id TU116771
length 1185
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G93576
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 24922467 ~ 24927188 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAAAGGGGGAGTGTTTTCCTCTGGCAAGTCGTTTCACTTTGCTGTTTTTCGCGGGAAAAAAGGGACTGGAGGCGGAGTGATTTCACTGCTAACAGGCGGAAGTACGGCAGAGCGCCAAACAGGCAACTGAGTATTTAATAAAGCACACTGGGCTAAAGTACTGAGAGatcGGATTTGTAAAAAGAATGGAGAGACCTTGACAATTCCTGTTAACAGTACAGACCCCAACTTGGTATTGAAACTGAGGAAGCCTGGAACAGATCAAACGTTTGTTTATATGACAGTAGTTTATAACCAAGCAACCTCCCCTGCAGAGTACAAAGACAGATGTGAATTTAATGCATCTGCTTCAGAGTTTTTTGTGAAAAATTTGACCAACAATGATAGTGGCATCTATACAGTCTATAACGATCTTGGTGAAAAGCTGTGGTGTTCAGAAGTGGTCTTGGAAGAAATCAAGCTAGAACACAGGACATGCAACTGACTACTGACACAGGGAGAAGACCAAATGATGGAAAAGAAAGTGTTCTTGGATAATAAATGTGCCAGAGGGTGATCTTTCAAGCTCGACAGAGGAGTGCTTCTCCACACCTGAGACTGCCAGGATGAAGATAGATAATGCAGTTAGACAGCTCAACATGTAATTTATCTCCTGTGATGAAATGTTCTTTAGTGGCGCATTAAGGACTTCAGAGCAATGTTAGAGCAATGTATTGTTGTTGAATTCACACACCAGTTGACTTGGTAAGTGTGACGAGAGACTGACAGACCCCAAATGGTTTCTCTAGAACTAGATTAATTTAAACCAGTTACTGTATTAGGAATAACCATTTACCAAAATCTAAagcctaaaaaataaaaatgggctAACCAAAAGCCTACAGTCATTTAAAATCCATGAGGCTTGGGAGTATGAGGACATCTTGGACTACAACTCCCGCAGTAACTGTAGCATtaaataaaaggctgttttggaatgCATTGCCGCTGGTGGTTAGATGCAAGCCAATAGCCAACCAGATTAAGCTTTTTGTCAAGAGACGGGAACATTAAGTGTCCAAATGCAGGATGCCAACTTTGccactttatttatatattatatatatttatttatatgtatatttatttattctcgtTTATTGACTGCAGTggaatgaaaatgccttaaatAAACCAAGACGGC

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116683 lncRNA downstream 192245 24725938 ~ 24730222 (-) True G93509
TU116675 lncRNA downstream 192245 24728842 ~ 24730222 (-) False G93509
TU116666 lncRNA downstream 242567 24677165 ~ 24679900 (-) True G93500
TU116575 lncRNA downstream 416857 24505382 ~ 24505610 (-) True G93434
TU116522 lncRNA downstream 620487 24301420 ~ 24301980 (-) True G93399
TU116791 lncRNA upstream 20470 24947658 ~ 24949136 (-) True AMCG00017839
TU116793 lncRNA upstream 22780 24949968 ~ 24950248 (-) True G93591
TU116811 lncRNA upstream 80496 25007684 ~ 25009604 (-) False AMCG00017844
TU116851 lncRNA upstream 179614 25106802 ~ 25107082 (-) True G93639
TU116853 lncRNA upstream 183702 25110890 ~ 25111090 (-) True G93641
AMCG00017836 mRNA downstream 3641 24903782 ~ 24918826 (-) True AMCG00017836
AMCG00017840 mRNA downstream 83320 24799083 ~ 24839147 (-) True AMCG00017840
AMCG00017838 mRNA downstream 134126 24759381 ~ 24788341 (-) True AMCG00017838
AMCG00017832 mRNA downstream 182966 24732695 ~ 24739501 (-) True AMCG00017832
AMCG00017833 mRNA downstream 196775 24716450 ~ 24725692 (-) True AMCG00017833
AMCG00017837 mRNA upstream 983 24928171 ~ 24942633 (-) True AMCG00017837
AMCG00017839 mRNA upstream 18907 24946095 ~ 24949042 (-) False AMCG00017839
AMCG00017845 mRNA upstream 38286 24965474 ~ 24986772 (-) True AMCG00017845
AMCG00017844 mRNA upstream 70356 24997544 ~ 25018212 (-) True AMCG00017844
AMCG00017846 mRNA upstream 148417 25075605 ~ 25080431 (-) True AMCG00017846
TU116215 other downstream 1600513 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1600513 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1600513 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5503111 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 1085473 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 1085473 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 1176838 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1181872 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 3176111 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile