RNA id: TU116851


Basic Information

Item Value
RNA id TU116851
length 281
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G93639
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 25106802 ~ 25107082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAATATAGCGCCTCCGCAAGTGAACAGAGCTGCGCAAACTCTGCCGAAGTTAACACGACTCTGCAGACACACGCAGCGCTGTATCTACAGTCTGCGCACACACAGGACACGGGCACAAAGGAAACCCCTGCCACCGCCGTGCTGTGCCCATAACGCTGCCAATCCGGCTGGTTAGGACCGTTTTGAAGGCCGACACATGGCCAGCACTTCTTTGTTGCTCTCCATTCCTGCGTGTCCAATGTTGTGCTTGTGCAACACATGACTCTCTAGCTGGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116811 lncRNA downstream 97198 25007684 ~ 25009604 (-) False AMCG00017844
TU116793 lncRNA downstream 156554 24949968 ~ 24950248 (-) True G93591
TU116791 lncRNA downstream 157666 24947658 ~ 24949136 (-) True AMCG00017839
TU116771 lncRNA downstream 179614 24922467 ~ 24927188 (-) True G93576
TU116683 lncRNA downstream 376580 24725938 ~ 24730222 (-) True G93509
TU116853 lncRNA upstream 3808 25110890 ~ 25111090 (-) True G93641
TU116881 lncRNA upstream 265851 25372933 ~ 25381038 (-) True G93660
TU116912 lncRNA upstream 410204 25517286 ~ 25517600 (-) True G93689
TU116944 lncRNA upstream 702462 25809544 ~ 25809853 (-) True G93718
TU116972 lncRNA upstream 838059 25945141 ~ 25946954 (-) False AMCG00017861
AMCG00017850 mRNA downstream 1660 25100833 ~ 25105142 (-) True AMCG00017850
AMCG00017851 mRNA downstream 6171 25095198 ~ 25100631 (-) True AMCG00017851
AMCG00017846 mRNA downstream 26371 25075605 ~ 25080431 (-) True AMCG00017846
AMCG00017844 mRNA downstream 88590 24997544 ~ 25018212 (-) True AMCG00017844
AMCG00017845 mRNA downstream 120030 24965474 ~ 24986772 (-) True AMCG00017845
AMCG00017852 mRNA upstream 8856 25115938 ~ 25224281 (-) True AMCG00017852
AMCG00017855 mRNA upstream 239738 25346820 ~ 25366550 (-) True AMCG00017855
AMCG00017862 mRNA upstream 715894 25822976 ~ 25923225 (-) True AMCG00017862
AMCG00017861 mRNA upstream 838678 25945760 ~ 25957648 (-) True AMCG00017861
AMCG00017866 mRNA upstream 905406 26012488 ~ 26015942 (-) True AMCG00017866
TU116215 other downstream 1784848 23318126 ~ 23321954 (-) True AMCG00017780
TU116216 other downstream 1784848 23318126 ~ 23321954 (-) False AMCG00017780
TU116217 other downstream 1784848 23318126 ~ 23321954 (-) False AMCG00017780
TU115494 other downstream 5687446 19412987 ~ 19419356 (-) False G92591
TU116981 other upstream 905579 26012661 ~ 26015492 (-) False AMCG00017866
TU116982 other upstream 905579 26012661 ~ 26015492 (-) False AMCG00017866
TU117033 other upstream 996944 26104026 ~ 26107805 (-) True G93795
TU117034 other upstream 1001978 26109060 ~ 26110074 (-) True G93796
TU117337 other upstream 2996217 28103299 ~ 28144589 (-) True AMCG00017906

Expression Profile